Stem-loop mdo-mir-27b

Accession

MI0005367

Description

Monodelphis domestica mdo-mir-27b precursor miRNA

Gene family

MIPF0000036; mir-27

Sequence

171473 reads, 2693 reads per million, 5 experiments

accucucugacaaggugcAGAGCUUAGCCGAUUGGUGAACAgucacugauuuccucuuugUUCACAGUGGCUAAGUUCUGCaccugaagagaagggg
.(((((((....((((((((((((((((((....((((((((...............))))))))..))))))))))))))))))..)))).)))..

Structure

-a   -    gaca                  AUUG        ucacug 
  ccu cucu    aggugcAGAGCUUAGCCG    GUGAACAg      a
  ||| ||||    ||||||||||||||||||    ||||||||      u
  gga gaga    uccaCGUCUUGAAUCGGU    CACUUguu      u
gg   a    --ag                  --GA        ucuccu 

Annotation confidence High

Genome context

chr6: 17696090-17696186 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from mdo-mir-27b

Mature mdo-miR-27b-3p

• Accession: MIMAT0004177
• Description: Monodelphis domestica mdo-miR-27b-3p mature miRNA
• Sequence: 61 - UUCACAGUGGCUAAGUUCUGC - 81
• Evidence: experimental ; Microarray [1], PCR [1], Illumina [2]

Mature mdo-miR-27b-5p

• Accession: MIMAT0026714
• Description: Monodelphis domestica mdo-miR-27b-5p mature miRNA
• Sequence: 19 - AGAGCUUAGCCGAUUGGUGAACA - 41
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 17965199
   In vitro and in silico annotation of conserved and nonconserved microRNAs in the genome of the marsupial Monodelphis domestica
   "Devor EJ, Samollow PB"
   "J Hered (2008) 99:66-72


2. PubMed ID: 23034410
   Birth and expression evolution of mammalian microRNA genes
   "Meunier J, Lemoine F, Soumillon M, Liechti A, Weier M, Guschanski K, Hu H, Khaitovich P, Kaessmann H"
   "Genome Res (2013) 23:34-45