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miRBase |
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Stem-loop sequence mtr-MIR169d |
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Accession | MI0005578 (change log) | |||||
Description | Medicago truncatula miR169d stem-loop | |||||
Gene family | MIPF0000037; MIR169_2 | |||||
Literature search |
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12 open access papers mention mtr-MIR169d | |||||
Stem-loop |
agaugaagccaaggaugacuugccgguauaauaguaauuugccacaaaucuagauagcuauua u g aa a --c g u -u uua 5' gc auguuuggau ggcggugagauu ca aauuacag a cauugugauuuug uga gcu a || |||||||||| |||||||||||| || |||||||| | ||||||||||||| ||| ||| a 3' cg uauaaaucua cugccacucuaa gu uuaauguc u gugacauuaaaac auu uga g -----------------------uuauaucggcuuccuacuggacggccuuuacuuugauuua - a ga a acu g u uu ugu |
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Confidence |
Annotation confidence: not enough data
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Genome context |
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Clustered miRNAs |
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Database links |
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Mature sequence mtr-miR169d-5p |
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Accession | MIMAT0011064 |
Previous IDs | mtr-miR169d |
Sequence |
6 - aagccaaggaugacuugccgg - 26 |
Evidence | experimental; 454 [1] |
Mature sequence mtr-miR169d-3p |
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Accession | MIMAT0022933 |
Sequence |
217 - ggcaggucauccuucggcuaua - 238 |
Evidence | experimental; Illumina [2] |
References |
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1 |
"
Unpublished (2007).
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2 |
PMID:19767456
"Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules"
Plant Cell. 21:2780-2796(2009).
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3 |
PMID:22156213
"MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs"
Genes Dev. 25:2540-2553(2011).
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