Stem-loop sequence mtr-MIR169d

Accession

MI0005578 (change log)

Description

Medicago truncatula miR169d stem-loop

Gene family

MIPF0000037; MIR169_2

Literature search

12 open access papers mention mtr-MIR169d
(50 sentences)

Stem-loop

   agaugaagccaaggaugacuugccgguauaauaguaauuugccacaaaucuagauagcuauua  u          g            aa  a        --c g             u   -u   uua 
5'                                                                gc auguuuggau ggcggugagauu  ca aauuacag   a cauugugauuuug uga  gcu   a
                                                                  || |||||||||| ||||||||||||  || ||||||||   | ||||||||||||| |||  |||   a
3'                                                                cg uauaaaucua cugccacucuaa  gu uuaauguc   u gugacauuaaaac auu  uga   g
   -----------------------uuauaucggcuuccuacuggacggccuuuacuuugauuua  -          a            ga  a        acu g             u   uu   ugu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr2: 13468364-13468603 [+]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR169d

• mtr-MIR169d: chr2: 13468364-13468603 [+]
• mtr-MIR169e: chr2: 13473516-13473616 [+]

Database links

• miRBase Tracker:MI0005578

Mature sequence mtr-miR169d-5p

• Accession: MIMAT0011064
• Previous IDs: mtr-miR169d
• Sequence: 6 - aagccaaggaugacuugccgg - 26
• Evidence: experimental; 454 [1]

Mature sequence mtr-miR169d-3p

• Accession: MIMAT0022933
• Sequence: 217 - ggcaggucauccuucggcuaua - 238
• Evidence: experimental; Illumina [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19767456 "Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules" Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M Plant Cell. 21:2780-2796(2009).
3. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).