Stem-loop mtr-MIR169d

Accession

MI0005578

Description

Medicago truncatula mtr-MIR169d precursor miRNA

Gene family

MIPF0000037; MIR169_2

Literature search

12 open access papers mention mtr-MIR169d
(50 sentences)

Sequence

agaugAAGCCAAGGAUGACUUGCCGGuauaauaguaauuugccacaaaucuagauagcuauuagcuauguuuggaugggcggugagauuaacaaaauuacagcagcauugugauuuuguugaugcuuuaaaguguaguuuuuaucaaaauuacagugguucacuguaauuaugagaaucucaccgucaaucuaaauaugcauuuaguuucauuuccGGCAGGUCAUCCUUCGGCUAUAuu
.((((.((((((((((((((((((((..(((((((.(((((.........))))).)))))))((.((((((((((.((((((((((((..((.((((((((.(.(((((((((((((.(((.(((.........)))..))).))))))))))))).)...)))))))).))..)))))))))))).))))))))))))..............)))))))))))))))).)))).))))

Structure

a    A    -                uauaauaguaauuugccacaaaucuagauagcuauua  u          g            aa  a        --c g             u   -u   uua 
 gaug AGCC AAGGAUGACUUGCCGG                                     gc auguuuggau ggcggugagauu  ca aauuacag   a cauugugauuuug uga  gcu   a
 |||| |||| ||||||||||||||||                                     || |||||||||| ||||||||||||  || ||||||||   | ||||||||||||| |||  |||   a
 uuAU UCGG UUCCUACUGGACGGcc                                     cg uauaaaucua cugccacucuaa  gu uuaauguc   u gugacauuaaaac auu  uga   g
-    A    C                -----------------------uuuacuuugauuua  -          a            ga  a        acu g             u   uu   ugu 

Annotation confidence Not enough data

Genome context

chr2: 13468364-13468603 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR169d

Mature mtr-miR169d-5p

• Accession: MIMAT0011064
• Description: Medicago truncatula mtr-miR169d-5p mature miRNA
• Sequence: 6 - AAGCCAAGGAUGACUUGCCGG - 26
• Evidence: experimental ; 454 [1]

Mature mtr-miR169d-3p

• Accession: MIMAT0022933
• Description: Medicago truncatula mtr-miR169d-3p mature miRNA
• Sequence: 217 - GGCAGGUCAUCCUUCGGCUAUA - 238
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 19767456
   Genome-wide Medicago truncatula small RNA analysis revealed novel microRNAs and isoforms differentially regulated in roots and nodules
   "Lelandais-Briere C, Naya L, Sallet E, Calenge F, Frugier F, Hartmann C, Gouzy J, Crespi M"
   "Plant Cell (2009) 21:2780-2796


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553