Stem-loop mtr-MIR166c

Accession

MI0005581

Description

Medicago truncatula mtr-MIR166c precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

9 open access papers mention mtr-MIR166c
(40 sentences)

Sequence

gcugagaggaacgcagucuggcucgaggaaugcucagaucuguuuugaucugaucgauauguucauaucuaauuaauucUCGGACCAGGCUUCAUUCCUCccauc
..((.((((((.(.(((((((.(((((((....(((((((......)))))))..(((((....))))).......))))))).))))))).).)))))).))..

Structure

gc  a      c c       c       -------------------augc       ug 
  ug gaggaa g agucugg ucgagga                       ucagauc  u
  || |||||| | ||||||| |||||||                       |||||||   
  ac CUCCUU C UCGGACC GGCUcuu                       agucuag  u
cu  c      A U       A       aauuaaucuauacuuguauagcu       uu 

Annotation confidence Not enough data

Genome context

chr3: 33641974-33642078 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR166c

Mature mtr-miR166c

• Accession: MIMAT0011067
• Description: Medicago truncatula mtr-miR166c mature miRNA
• Sequence: 80 - UCGGACCAGGCUUCAUUCCUC - 100
• Evidence: experimental ; Illumina [2]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553