Stem-loop sequence mtr-MIR398a

Accession

MI0005599 (change log)

Description

Medicago truncatula miR398a stem-loop

Gene family

MIPF0000107; MIR398

Literature search

4 open access papers mention mtr-MIR398a
(10 sentences)

Stem-loop

   u        a     a               ug    aucau     gu 
5'  cucagagg gugac cugagaacacaagau  auua     auaau  a
    |||||||| ||||| |||||||||||||||  ||||     |||||  u
3'  gaguuucc cacug gacucuuguguuuua  ugau     uguug  u
   u        c     -               gu    --cau     gu 

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (JCVI_Mt3.5.2): chr5: 18765673-18765770 [-]
• Overlapping transcripts:

  intergenic

Clustered miRNAs

< 10kb from mtr-MIR398a

• mtr-MIR398a: chr5: 18765673-18765770 [-]
• mtr-MIR2119: chr5: 18765366-18765495 [-]

Database links

• miRBase Tracker:MI0005599

Mature sequence mtr-miR398a-5p

• Accession: MIMAT0022935
• Sequence: 8 - ggagugacacugagaacacaag - 29
• Evidence: experimental; Illumina [3]

Mature sequence mtr-miR398a-3p

• Accession: MIMAT0011085
• Previous IDs: mtr-miR398a
• Sequence: 73 - uguguucucaggucaccccuu - 93
• Evidence: experimental; Northern [2]

References

1. " Bonnet E Unpublished (2007).
2. PMID:19555436 "Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families" Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R New Phytol. 184:85-98(2009).
3. PMID:22156213 "MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs" Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC Genes Dev. 25:2540-2553(2011).