Stem-loop mtr-MIR166f

Accession

MI0005614

Description

Medicago truncatula mtr-MIR166f precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

9 open access papers mention mtr-MIR166f
(40 sentences)

Sequence

uguuuggaaugagguuuguuccaagaucaucacacaucauguuucuucuucccuuucaauaauucuugauuaauuuauguucauacaucuauauauauaucuauauauauuaucaagucauuacaugcaugggaugagauauugagagugaucUCGGACCAGGCUUCAUUCCUCacacc
(((..(((((((((((((.(((.(((((((......(((....((((..((((...((.((((.((((((......((((....)))).((((((((....))))))))..))))))..))))..))...)))).))))...)))..))))))).))).)))))))))))))..)))..

Structure

--   uu             u   a       cacaca   uguu    cu    uuu  -a    -u      uaauuuauguucauacauc        u 
  ugu  ggaaugagguuug ucc agaucau      uca    ucuu  uccc   ca  uaau  cuugau                   uauauaua a
  |||  ||||||||||||| ||| |||||||      |||    ||||  ||||   ||  ||||  ||||||                   ||||||||  
  aca  CCUUACUUCGGAC AGG Ucuagug      agu    agag  aggg   gu  auua  gaacua                   auauauau u
cc   CU             C   C       ----ag   -uau    -u    uac  ac    cu      -----------------uu        c 

Annotation confidence Not enough data

Genome context

chr7: 26018024-26018202 [-]

Mature mtr-miR166f

• Accession: MIMAT0011100
• Description: Medicago truncatula mtr-miR166f mature miRNA
• Sequence: 154 - UCGGACCAGGCUUCAUUCCUC - 174
• Evidence: experimental ; Illumina [2-3]

References

1. 
   "Bonnet E"
   (2007) None:


2. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


3. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105