Stem-loop mtr-MIR396a

Accession

MI0005621

Description

Medicago truncatula mtr-MIR396a precursor miRNA

Literature search

4 open access papers mention mtr-MIR396a
(9 sentences)

Sequence

ugcuuUUCCACAGCUUUCUUGAACUUcuuucguaucuuaaaucuguuuucaagauuaaaaguccuagaaGCUCAAGAAAGCUGUGGGAGAaua
...(((((((((((((((((((.(((((.......(((.(((((.......)))))..)))....))))).)))))))))))))))))))...

Structure

ugc                   A     uucguau   -a     gu 
   uuUUCCACAGCUUUCUUGA CUUcu       cuu  aaucu  u
   ||||||||||||||||||| |||||       |||  |||||  u
   AGAGGGUGUCGAAAGAACU Gaaga       gaa  uuaga  u
aua                   C     ---uccu   aa     ac 

Annotation confidence Not enough data

Genome context

chr4: 39789612-39789704 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from mtr-MIR396a

Mature mtr-miR396a-5p

• Accession: MIMAT0011107
• Description: Medicago truncatula mtr-miR396a-5p mature miRNA
• Sequence: 6 - UUCCACAGCUUUCUUGAACUU - 26
• Evidence: experimental ; 454 [2], Illumina [4]

Mature mtr-miR396a-3p

• Accession: MIMAT0026456
• Description: Medicago truncatula mtr-miR396a-3p mature miRNA
• Sequence: 70 - GCUCAAGAAAGCUGUGGGAGA - 90
• Evidence: experimental ; Illumina [3-4]

References

1. PubMed ID: 19555436
   Cloning and characterization of small RNAs from Medicago truncatula reveals four novel legume-specific microRNA families
   "Jagadeeswaran G, Zheng Y, Li YF, Shukla LI, Matts J, Hoyt P, Macmil SL, Wiley GB, Roe BA, Zhang W, Sunkar R"
   "New Phytol (2009) 184:85-98


2. 
   "Bonnet E"
   (2007) None:


3. PubMed ID: 22156213
   MicroRNAs as master regulators of the plant NB-LRR defense gene family via the production of phased, trans-acting siRNAs
   "Zhai J, Jeong DH, De Paoli E, Park S, Rosen BD, Li Y, Gonzalez AJ, Yan Z, Kitto SL, Grusak MA, Jackson SA, Stacey G, Cook DR, Green PJ, Sherrier DJ, Meyers BC"
   "Genes Dev (2011) 25:2540-2553


4. PubMed ID: 23572382
   microRNA profiling of root tissues and root forming explant cultures in Medicago truncatula
   "Eyles RP, Williams PH, Ohms SJ, Weiller GF, Ogilvie HA, Djordjevic MA, Imin N"
   "Planta (2013) 238:91-105