Stem-loop ppt-MIR160d

Accession

MI0005658

Description

Physcomitrella patens ppt-MIR160d precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention ppt-MIR160d
(9 sentences)

Sequence

auguuggaucCGCCUGGCUCCCUGCAUGCCGccugugaaugcugugaagagacuuacuagaauucauagcuggcguggagggagccaagcagacucugaa
...(((((((.((.(((((((((.(((((((.((((((((.((((((......)))).)).)))))))).))))))).))))))))).)).)).))))).

Structure

aug     -  C  C         G       c        g  -    ag 
   uugga uc GC UGGCUCCCU CAUGCCG cugugaau cu guga  a
   ||||| || || ||||||||| ||||||| |||||||| || ||||   
   agucu ag cg accgaggga gugcggu gauacuua ga cauu  g
--a     c  a  a         g       c        a  u    ca 

Annotation confidence Not enough data

Genome context

Chr21: 10139128-10139227 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR160d

Mature ppt-miR160d

• Accession: MIMAT0004350
• Description: Physcomitrella patens ppt-miR160d mature miRNA
• Sequence: 11 - CGCCUGGCUCCCUGCAUGCCG - 31
• Evidence: experimental ; 454 [2]

References

1. PubMed ID: 17359535
   Evidence for the rapid expansion of microRNA-mediated regulation in early land plant evolution
   Fattash I, Voss B, Reski R, Hess WR, Frank W
   BMC Plant Biol (2007) 7:13


2. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769