Stem-loop dme-mir-972

Accession

MI0005829

Description

Drosophila melanogaster dme-mir-972 precursor miRNA

Literature search

2 open access papers mention dme-mir-972
(5 sentences)

Sequence

333 reads, 38 reads per million, 28 experiments

agaaugauagggaaauugcUAAAUAUUUUUUUUGUAUAAAuaacuuuuaacuuuUGUACAAUACGAAUAUUUAGGCauuucucaaaucaaa
....((((.(((((((..((((((((((...(((((((((............)))))))))...))))))))))..)))))))..))))..

Structure

agaa    -a       ug          UUU         uaacu 
    ugau  gggaaau  cUAAAUAUUU   UUGUAUAAA     u
    ||||  |||||||  ||||||||||   |||||||||      
    acua  cucuuua  GAUUUAUAAG   AACAUGUuu     u
--aa    aa       CG          CAU         ucaau 

Annotation confidence Low

Genome context

chrX: 19551152-19551242 [+]

Clustered miRNAs

8 other miRNAs are < 10 kb from dme-mir-972

Mature dme-miR-972-3p

• Accession: MIMAT0005488
• Description: Drosophila melanogaster dme-miR-972-3p mature miRNA
• Sequence: 55 - UGUACAAUACGAAUAUUUAGGC - 76
• Evidence: experimental ; 454 [1]

Mature dme-miR-972-5p

• Accession: MIMAT0020869
• Description: Drosophila melanogaster dme-miR-972-5p mature miRNA
• Sequence: 20 - UAAAUAUUUUUUUUGUAUAAA - 40
• Evidence: not_experimental

References

1. PubMed ID: 17989254
   Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs
   "Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC"
   "Genome Res (2007) 17:1850-1864