Stem-loop sequence dme-mir-137

Accession

MI0005849 (change log)

Description

Drosophila melanogaster miR-137 stem-loop

Gene family

MIPF0000106; mir-137

Literature search

9 open access papers mention dme-mir-137
(55 sentences)

Stem-loop

   ---c      caa  gc -        g    u   u     --c  a 
5'     aaucuc   ug  c acguguau cucg agc auaac   ug a
       ||||||   ||  | |||||||| |||| ||| |||||   || a
3'     uuagag   ac  g ugcacaua gagu ucg uauug   ac u
   uugu      -cc  uu a        a    -   u     uaa  c 

Deep sequencing

4427 reads, 40.4 reads per million, 47 experiments

Confidence

Annotation confidence: high

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Genome context

• Coordinates (Release_6; GCA_000001215.4): chr2R: 16065254-16065344 [-]
• Overlapping transcripts:

  intergenic

Database links

• RNAcentral:URS000079602B_7227
• miRBase Tracker:MI0005849

Mature sequence dme-miR-137-5p

• Accession: MIMAT0020888
• Sequence: 16 - acguguaugcucguagcuauaac - 38
• Deep sequencing: 226 reads, 27 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS000057E310_7227

Mature sequence dme-miR-137-3p

• Accession: MIMAT0005507
• Previous IDs: dme-miR-137
• Sequence: 54 - uauugcuugagaauacacguag - 75
• Deep sequencing: 4197 reads, 47 experiments
• Evidence: experimental; 454 [1-2], Illumina [2]
• Database links:
  • RNAcentral:URS000001B36D_7227
• Predicted targets:
  • TargetScanFly:dme-miR-137
  • microrna.org:dme-miR-137-3p

References

1. PMID:17989254 "Evolution, biogenesis, expression, and target predictions of a substantially expanded set of Drosophila microRNAs" Ruby JG, Stark A, Johnston WK, Kellis M, Bartel DP, Lai EC Genome Res. 17:1850-1864(2007).
2. PMID:17989255 "Systematic discovery and characterization of fly microRNAs using 12 Drosophila genomes" Stark A, Kheradpour P, Parts L, Brennecke J, Hodges E, Hannon GJ, Kellis M Genome Res. 17:1865-1879(2007).