Stem-loop ppt-MIR160f

Accession

MI0005902

Description

Physcomitrella patens ppt-MIR160f precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

3 open access papers mention ppt-MIR160f
(9 sentences)

Sequence

guucaugguugaacgguggggaguuggacUGCCUGGCUCCCUGUAUGCCAccugcggggcuugucaaaaugauugccaggcugcauagcuggcauccagggagccagacagaccuuucucuugccucauccggguccc
(((((....)))))(((((((((..((.(((.(((((((((((.((((((.(((.(.((((((.(((.....))).)))))).).))).)))))).))))))))))).))).)).))).)))))).............

Structure

guucaugguugaac      -   uu  a   C           U      c   c g      u   a 
              gguggg gag  gg cUG CUGGCUCCCUG AUGCCA cug g ggcuug caa a
              |||||| |||  || ||| ||||||||||| |||||| ||| | |||||| ||| u
              ccguuc cuu  cc gac gaccgagggac uacggu gau c ucggac guu g
-cccugggccuacu      u   -u  a   a           c      c   a g      c   a 

Annotation confidence Not enough data

Genome context

Chr09: 9548423-9548560 [-]

Mature ppt-miR160f

• Accession: MIMAT0005035
• Description: Physcomitrella patens ppt-miR160f mature miRNA
• Sequence: 30 - UGCCUGGCUCCCUGUAUGCCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769