Stem-loop ppt-MIR166l

Accession

MI0005915

Description

Physcomitrella patens ppt-MIR166l precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

2 open access papers mention ppt-MIR166l
(5 sentences)

Sequence

aauuugugaagcugaaugaaacguuuucguggggaaugacguguggcccguagccauguaucuuggcaugccagaauuaugcUCCGGACCAGGCUUCAUUCCCcucggcaacguugcaugaugguaauuaugu
...................((((((.(((.(((((((((.((.(((.(((.(((.(((.((.((((....)))).)))))))).))).))).)).))))))))).))).))))))(((((((....)))))))

Structure

aauuugugaagcugaauga      u   u         c  g   c   u   c   u  c    c 
                   aacguu ucg ggggaauga gu ugg ccg agc aug au uugg a
                   |||||| ||| ||||||||| || ||| ||| ||| ||| || ||||  
                   uugcaa ggc cCCCUUACU CG ACC GGC Ucg uau ua gacc u
-uguauuaaugguaguacg      c   u         U  G   A   C   -   -  a    g 

Annotation confidence Not enough data

Genome context

Chr05: 7144693-7144825 [+]

Mature ppt-miR166l

• Accession: MIMAT0005048
• Description: Physcomitrella patens ppt-miR166l mature miRNA
• Sequence: 83 - UCCGGACCAGGCUUCAUUCCC - 103
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769