Stem-loop ppt-MIR408b

Accession

MI0005917

Description

Physcomitrella patens ppt-MIR408b precursor miRNA

Gene family

MIPF0000102; MIR408

Literature search

1 open access papers mention ppt-MIR408b
(4 sentences)

Sequence

guggaagagagagagugguggaagggagggaagccagcgugaggcaaugcaugacaacagcaugcccaggagguccugaggguguuguccucaUGCACUGCCUCUUCCCUGGCUucccuacauagcucgccauucuugugcucu
.....((((.(((((((((((....((((((((((((.(.((((((.(((((((..(((((((.(.((((....)))).).)))))))..))))))).))))))..).))))))))))).)....).))))))))))...))))

Structure

gugga    --a          - aagg -           c -u      a       ca       g c    a 
     agag   gagaguggug g    g agggaagccag g  gaggca ugcauga  acagcau c cagg g
     ||||   |||||||||| |    | ||||||||||| |  |||||| |||||||  ||||||| | ||||  
     ucuc   uucuuaccgc c    c ucccuUCGGUC C  CUCCGU ACGUacu  uguugug g gucc g
-----    gug          u gaua a           C UU      C       cc       g a    u 

Annotation confidence Not enough data

Genome context

Chr17: 9264176-9264319 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR408b

Mature ppt-miR408b

• Accession: MIMAT0005050
• Description: Physcomitrella patens ppt-miR408b mature miRNA
• Sequence: 94 - UGCACUGCCUCUUCCCUGGCU - 114
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769