Stem-loop ppt-MIR533c

Accession

MI0005928

Description

Physcomitrella patens ppt-MIR533c precursor miRNA

Gene family

MIPF0000356; MIR533

Sequence

aguguuugaaagaggguuagcgacauugagagcuguucagacuaugagaaaguguguggaagaggauuuggugacuugaacuggugcuucaaggaaagccuaaaguccaaguuccacucuugcuCUCACAGUCUGCACAGCUCUCuguaucucuuccccuaguauaugucu
............((((..((.((.((.(((((((((.((((((.(((((..(.(.((((((..(((((((((..(((((((....).))))))....)))..))))))...)))))).).)..))))).)))))).))))))))).)).)).))..))))...........

Structure

aguguuugaaag    uu  c  c  u         u      a     aa u u      -ga      --   --ga      - u 
            aggg  ag ga au gagagcugu cagacu ugaga  g g guggaa   ggauuu  ggu    cuugaa c g
            ||||  || || || ||||||||| |||||| |||||  | | ||||||   ||||||  |||    |||||| |  
            uccc  uc cu ug CUCUCGACA GUCUGA ACUCu  u c caccuu   ccugaa  ccg    gaacuu g g
-ucuguauauga    cu  u  a  u         C      C     cg u u      gaa      au   aaag      c u 

Annotation confidence Not enough data

Genome context

Chr22: 10965809-10965979 [-]

Mature ppt-miR533c

• Accession: MIMAT0005061
• Description: Physcomitrella patens ppt-miR533c mature miRNA
• Sequence: 125 - CUCACAGUCUGCACAGCUCUC - 145
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769