Accession
MI0005932
Description
Physcomitrella patens
ppt-MIR536d precursor miRNA
Gene family
MIPF0000398;
MIR536
Literature search
2 open access papers mention ppt-MIR536d
(16 sentences)
(16 sentences)
Sequence
agggugcauuccaagugccgucccuuggaagccgcaguuuggcacgaagcccuuucuccugccgcuacuguuuuguuagucagguuugcagcgugucucgauauaguggugugcuuccguugcuauccuuucccuccagguaggaauucuguggcaaacuagugguugguucgcuuaucaaguugcaguccuucauaccuugauuuugaauuacugcagucacacccuucuugucggcaguuuuuuuuuuuuuuguguguccuaccgacugcacugacugcagaaagucgaagcaauggaggugucguugcauuuuccucauaguuuugcuagcuucuacuucuggguugauguugaacccacuccacccacuuguagcggaaagauguuagaauUUCGUGCCAAGCUGUGUGCAACcaagggguuuguuacuucaaauccac
..(((((.......)))))..(((((((..(((((((((((((((((((..((..(..(((((((((((((.(((..((.((.(((...))).)).))))).))))))))).))(((((((((..((((..((.....)).)))).....((((.......((((..((((((..((((.(((.((((((...(((((...((....(((..(((((.(.((.........)).).)))))..)))...))...))))).......)))))))))((((.(((((.((.(((((...((((((((....))))))))....((((...))))))))).))))))))))))))).))))))....))))))))..)))))))))))..)..))..))))))))))))))))).))..)))))))(((((......)))))....
..(((((.......)))))..(((((((..(((((((((((((((((((..((..(..(((((((((((((.(((..((.((.(((...))).)).))))).))))))))).))(((((((((..((((..((.....)).)))).....((((.......((((..((((((..((((.(((.((((((...(((((...((....(((..(((((.(.((.........)).).)))))..)))...))...))))).......)))))))))((((.(((((.((.(((((...((((((((....))))))))....((((...))))))))).))))))))))))))).))))))....))))))))..)))))))))))..)..))..))))))))))))))))).))..)))))))(((((......)))))....
Structure
agggugcauuccaagugccgu aa - cc uu uc gccgcuacuguuuuguuagucagguuugcagcgugucucgauauaguggugugc uauccuuucccuccagguaggaauucu caaacua --uu cu -------------------------------------------------------------------------a u ----cuu cuu uuuu uu a u cac
cccuugg gc cgcaguuuggcacgaag cu c cu uuccguugc gugg gugg gguucg uauc agu gcaguc cauac ga gaa acugc g ca c
||||||| || ||||||||||||||||| || | || ||||||||| |||| |||| |||||| |||| ||| |||||| ||||| || ||| ||||| | || c
gggaacC CG GUGUCGAACCGUGCUUu ga g ga aaggcgaug cacc cacc ccaagu guag uca cgucag gugug uu uuu ugacg c gu u
-caccuaaacuucauuguuug AA U aa uu ua ------------------------------------------------------ -------------------------uu ------- ucac -u uugggucuucaucuucgaucguuuugauacuccuuuuacguugcuguggagguaacgaagcugaaagacgucag - ccauccu uuu -uuu uu g u ucu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Genome context
Chr24: 5312887-5313329 [+]
Database links
Mature ppt-miR536d
| Accession | MIMAT0005064 |
| Description | Physcomitrella patens ppt-miR536d mature miRNA |
| Sequence | 396 - UUCGUGCCAAGCUGUGUGCAAC - 417 |
| Evidence |
experimental
454 [1] |
References
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