Stem-loop ppt-MIR1223g

Accession

MI0005956

Description

Physcomitrella patens ppt-MIR1223g precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

aguguauugaucagcguggagcuucagcauggguguuugaccuuacaacucggcauugaucaaucguggUUGUAGAGUCAUGCACCUCUGccgacucuccggcucuguguacugcu
(((((((.....(((.(((((..((.(((.((((((.((((.(((((((((((..........))).)))))))).)))).)))))).))).))..))))))))....)))).)))

Structure

   -    ugauc   g     cu  a   u      u    c        -   cauu 
agu guau     agc uggag  uc gca gggugu ugac uuacaacu cgg    g
||| ||||     ||| |||||  || ||| |||||| |||| |||||||| |||     
ucg caug     ucg gccuc  ag cGU UCCACG ACUG GAUGUUgg gcu    a
   u    -uguc   -     uc  c   C      U    A        u   aacu 

Annotation confidence Not enough data

Genome context

Chr06: 2753121-2753236 [+]

Clustered miRNAs

2 other miRNAs are < 10 kb from ppt-MIR1223g

Mature ppt-miR1223g

• Accession: MIMAT0005098
• Description: Physcomitrella patens ppt-miR1223g mature miRNA
• Sequence: 70 - UUGUAGAGUCAUGCACCUCUG - 90
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769