Stem-loop ppt-MIR1223h

Accession

MI0005957

Description

Physcomitrella patens ppt-MIR1223h precursor miRNA

Gene family

MIPF0000383; MIR1223

Sequence

gagugagugggucagcagcauggagguucgacaagggugcuuggcccuacuacccgugaacccacccaaggagagacguggUUGUAGAGUCACGCACCUCUGccgagccuccugcucguugugcuucuucuu
(((.(((.((..((((((((.(((((((((.((.((((((.((((.((((.((((((....((......))....))).))).)))).)))).)))))).)).))))))))))))).))))..)).))))))

Structure

   u   u  gu    -    u         a  a      u    c    u   -   gaac  ac 
gag gag gg  cagc agca ggagguucg ca gggugc uggc cuac acc cgu    cc  c
||| ||| ||  |||| |||| ||||||||| || |||||| |||| |||| ||| |||    ||   
uuc uuc uc  guug ucgu ccuccgagc GU UCCACG ACUG GAUG Ugg gca    gg  c
   -   u  gu    c    -         c  C      C    A    U   u   gaga  aa 

Annotation confidence Not enough data

Genome context

Chr16: 14295273-14295404 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1223h

Mature ppt-miR1223h

• Accession: MIMAT0005099
• Description: Physcomitrella patens ppt-miR1223h mature miRNA
• Sequence: 82 - UUGUAGAGUCACGCACCUCUG - 102
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769