Stem-loop ppt-MIR1023a

Accession

MI0005960

Description

Physcomitrella patens ppt-MIR1023a precursor miRNA

Gene family

MIPF0000396; MIR1023

Sequence

gggagcgauuggaccaccuugcaguuucauggcACACUCUCUCCAUUUCUCUACcguucaugcagcgguugaucgauuggguugcugguugauugaucgaucgauggucaggaguuggaAGAGAAUUGGAGAGAGUGCAUugugaauugcgggguugacgaggcggaggg
....((..(((..(.(((((((((((.(((((..(((((((((((.((((((.(((.((...((.(((((((((((((((.(....).))))))))))))))).)).....))..))).)))))).)))))))))))..)))))))))))))))).).))).))......

Structure

--ggga  ga   ga c           u     cA           U      A   -u  --aug  g               g u 
      gc  uug  c accuugcaguu caugg  CACUCUCUCCA UUCUCU Ccg  uc     ca cgguugaucgauugg u g
      ||  |||  | ||||||||||| |||||  ||||||||||| |||||| |||  ||     || ||||||||||||||| |  
      cg  agc  g uggggcguuaa guguU  GUGAGAGAGGU AAGAGA ggu  ag     gu gcuagcuaguuaguu g c
gggagg  -g   -a u           -     AC           U      a   ug  gacug  a               g u 

Annotation confidence Not enough data

Genome context

Chr01: 17026731-17026900 [-]

Mature ppt-miR1023a-5p

• Accession: MIMAT0005102
• Description: Physcomitrella patens ppt-miR1023a-5p mature miRNA
• Sequence: 34 - ACACUCUCUCCAUUUCUCUAC - 54
• Evidence: experimental ; 454 [1]

Mature ppt-miR1023a-3p

• Accession: MIMAT0005103
• Description: Physcomitrella patens ppt-miR1023a-3p mature miRNA
• Sequence: 120 - AGAGAAUUGGAGAGAGUGCAU - 140
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769