Stem-loop ppt-MIR1026a

Accession

MI0005967

Description

Physcomitrella patens ppt-MIR1026a precursor miRNA

Gene family

MIPF0000413; MIR1026

Literature search

2 open access papers mention ppt-MIR1026a
(4 sentences)

Sequence

augaaaguucuugagacacucucuaggucUGAGAAAGACUUGAGAGGACAcuccuacaauagccucgggaacugcaugacguuuuucauuagaugaggugguucccugagcauuugcaggacaguucuuucaagccuuccucggacuuuggauuguuuguuccauaucaug
((((.........(((((.(((..(((((((((.(((.(((((((((((..((((.(((..((.(((((((((((....(((((......)))))..))))))))).))))..))).))))..))))))))))).))).))))))))).))).)))))........)))).

Structure

-    aaguucuug     c   cu         A   A           Ac    a   ua  c  -         auga     uu 
 auga         agaca ucu  aggucUGAG AAG CUUGAGAGGAC  uccu caa  gc uc gggaacugc    cguuu  c
 ||||         ||||| |||  ||||||||| ||| |||||||||||  |||| |||  || || |||||||||    |||||   
 uacu         uuugu agg  uucaggcuc uuc gaacuuucuug  agga guu  cg ag cccuuggug    guaga  a
g    -auaccuug     u   -u         c   c           ac    c   ua  -  u         --ga     uu 

Annotation confidence Not enough data

Genome context

Chr22: 2828956-2829126 [+]

Mature ppt-miR1026a

• Accession: MIMAT0005112
• Description: Physcomitrella patens ppt-miR1026a mature miRNA
• Sequence: 30 - UGAGAAAGACUUGAGAGGACA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769