Stem-loop ppt-MIR1030b

Accession

MI0005976

Description

Physcomitrella patens ppt-MIR1030b precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

ugucaugcaUCUGCAUCUGCACCUGCACCAcaaugugaucgcggcgaucucuguuccggagguucagcccgguaguuuuacaugcggcccugcauucagcgcuggcaucuuccguggacaaguuucguagcucacauuccgauggugcagugcuuaugcagaagcguugc
.((.((((.(((((((..((((.(((((((((((((((..((.((((.((.(((((((((((....(((.(((.(((....(((((....)))))..)))))))))..)))))).)))))))..)))).)))))))))..).)))))))))))..))))))).)))).))

Structure

u  c    a       CU    C       - --       uc  g    -u  c     -      uuca   c   a   uuac     g 
 gu augc UCUGCAU  GCAC UGCACCA c  aauguga  gc gcga  cu uguuc cggagg    gcc ggu guu    augcg c
 || |||| |||||||  |||| ||||||| |  |||||||  || ||||  || ||||| ||||||    ||| ||| |||    |||||  
 cg ugcg agacgua  cgug acguggu g  uuacacu  cg ugcu  ga acagg gccuuc    cgg ucg cga    uacgu c
-  u    a       uu    -       a cc       --  a    uu  -     u      --ua   -   -   --cu     c 

Annotation confidence Not enough data

Genome context

Chr26: 4349044-4349213 [-]

Mature ppt-miR1030b

• Accession: MIMAT0005124
• Description: Physcomitrella patens ppt-miR1030b mature miRNA
• Sequence: 10 - UCUGCAUCUGCACCUGCACCA - 30
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769