Stem-loop ppt-MIR1030d

Accession

MI0005978

Description

Physcomitrella patens ppt-MIR1030d precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

aguccuccgcucugcugcaauguaaugugUCUGCAUCUGCACCUGCACCAcgguguaacaguggcgacgcuuuuucuugcggauaucaggcacucaugccguugcuucccugcauuuuccaauguggcguuggugcaauccgcagacaaucagugucucucacauuacgauggugagaugcagaugcagagguguuacauugcaacugacccucaauu
..........((.(.(((((((((((((.((((((((((((.((.(((((...(((((..((((.((((((..((.((((((((.....(((((.((((((.(((......)))..........)))))).))))).))))))))..))..))))))..)))).))))).))))))).)))))))))))).))))))))))))).).)).........

Structure

aguccuccgc  u c             g            C  G     cgg     ca    -c      uu  -c        aucag     c      ---------u   uu 
          uc g ugcaauguaaugu UCUGCAUCUGCA CU CACCA   uguaa  gugg  gacgcu  uu  uugcggau     gcacu augccg          ugc  c
          || | ||||||||||||| |||||||||||| || |||||   |||||  ||||  ||||||  ||  ||||||||     ||||| ||||||          |||   
          ag c acguuacauugug agacguagacgu ga guggu   gcauu  cacu  cuguga  aa  gacgccua     cgugg ugcggu          acg  c
-uuaacuccc  u a             g            a  -     --a     -a    cu      cu  ca        ----a     u      guaaccuuuu   uc 

Annotation confidence Not enough data

Genome context

Chr03: 9992930-9993147 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030d

Mature ppt-miR1030d

• Accession: MIMAT0005126
• Description: Physcomitrella patens ppt-miR1030d mature miRNA
• Sequence: 30 - UCUGCAUCUGCACCUGCACCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769