Stem-loop ppt-MIR1030f

Accession

MI0005980

Description

Physcomitrella patens ppt-MIR1030f precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

ccucuacauaacuacuccaaugccacguaUCUGCAUCUGCACCUGCACCAaaguuuuguaauucuacggcucgugguagucuguuguugugaaggugggauguagcugaguguauuacucgguguucauuugaucauuauuacccgauggugcggguucuuaugcagagccguggcauuggaguaauccucuacuu
............(((((((((((((((..(((((((..(.((((((((((.....(((((....))))).(((.((((..........((((.(((.(((((..((((((((...))))))))...))))).))).))))))))))))))))))))).)..)))))))..)))))))))))))))...........

Structure

ccucuacauaac               ua       CU C          aaguuuuguaauucuacggc   u    gucuguuguu    a   g     -ua        u 
            uacuccaaugccacg  UCUGCAU  G ACCUGCACCA                    ucg ggua          guga ggu ggaug   gcugagug  
            |||||||||||||||  |||||||  | ||||||||||                    ||| ||||          |||| ||| |||||   |||||||| a
            augagguuacggugc  agacgua  c ugggcguggu                    agc ccau          uauu cua uuuac   uggcucau  
-uucaucuccua               cg       uu u          --------------------   -    ----------    a   g     uug        u 

Annotation confidence Not enough data

Genome context

Chr14: 495765-495960 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030f

Mature ppt-miR1030f

• Accession: MIMAT0005128
• Description: Physcomitrella patens ppt-miR1030f mature miRNA
• Sequence: 30 - UCUGCAUCUGCACCUGCACCA - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769