Stem-loop ppt-MIR1030i

Accession

MI0005983

Description

Physcomitrella patens ppt-MIR1030i precursor miRNA

Gene family

MIPF0000380; MIR1030

Sequence

aauucuccucuucaucgcuguaaugccauguuCCUGCAUCUGCACCUGCACCGcacugccucacgagaaugugcacgaauggaucagagcgguguugugcaaauccugcuuucagucaaucacugagcuugaguuuuagcaauucuuauuuccucugaacuuucuucuggcauuauagugguggaggugcuuaugcagaaauauugcauugcggcugagagccacuaaug
.......((((.((..((((((((((.(((((.((((((..((((((.((((((..((((....(((((.((.((.((..(((...((((((.(((.....))).))))))(((((.....)))))(((........)))..........))))))).)).)))))..)))).....)))))).))))))..)))))).))))).)))))))))))))))).........

Structure

--aauucuc    u  uc          c     C      CU      G      ---ac    ucac     u  g  c  au   ------------------------------------uca      u   g 
         cucu ca  gcuguaaugc auguu CUGCAU  GCACCU CACCGc     ugcc    gagaa gu ca ga  gga                                       gagcgg guu u
         |||| ||  |||||||||| ||||| ||||||  |||||| ||||||     ||||    ||||| || || ||  |||                                       |||||| ||| g
         gaga gu  cggcguuacg uauaa gacgua  cgugga guggug     acgg    uucuu ca gu cu  ccu                                       uucguc uaa c
guaaucacc    -  --          u     a      uu      g      auauu    --uc     u  a  -  --   uuauucuuaacgauuuugaguucgagucacuaacugacu      c   a 

Annotation confidence Not enough data

Genome context

Chr14: 495467-495696 [-]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1030i

Mature ppt-miR1030i

• Accession: MIMAT0005131
• Description: Physcomitrella patens ppt-miR1030i mature miRNA
• Sequence: 33 - CCUGCAUCUGCACCUGCACCG - 53
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769