Stem-loop ppt-MIR1031b

Accession

MI0005986

Description

Physcomitrella patens ppt-MIR1031b precursor miRNA

Gene family

MIPF0000416; MIR1031

Sequence

acggcggaaguucuggaucacaaauuugcUCAAUGCUCUCUGGAGCUUCUgugccguugcuuuggggaguguggguuugucccccuggacaggucugcagaaccugacggccuuggcccugaucugcaucccucucuuaauugaaccucagaagcuucauaggacauugacuugauuugugacccugugaugaagaaa
...((((.......((.(((((((((...((((((.(((.(((((((((((.((((..((((((((...(((((((((((((....)))))))))))))...))))).)))..)))).................((......))....))))))))))).))).))))))...)))))))))))))))..........

Structure

-------acg    aaguucu  a         ugc      C   C           ------------------------------u    uu   -     gag             c 
          gcgg       gg ucacaaauu   UCAAUG UCU UGGAGCUUCUg                               gccg  gcu uuggg   uguggguuugucc c
          ||||       || |||||||||   |||||| ||| |||||||||||                               ||||  ||| |||||   |||||||||||||  
          uguc       cc aguguuuag   aguuac gga acuucgaagac                               cggu  cgg agucc   acgucuggacagg c
aaagaaguag    -------  -         uuc      a   u           uccaaguuaauucucucccuacgucuagucc    uc   c     aag             u 

Annotation confidence Not enough data

Genome context

Chr14: 5256324-5256521 [+]

Mature ppt-miR1031b

• Accession: MIMAT0005134
• Description: Physcomitrella patens ppt-miR1031b mature miRNA
• Sequence: 30 - UCAAUGCUCUCUGGAGCUUCU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769