Stem-loop ppt-MIR1034

Accession

MI0005993

Description

Physcomitrella patens ppt-MIR1034 precursor miRNA

Sequence

gcguuucaaggcucauaaccucauucuugcaagcacuacgcugccaaagucaugacugucuuccuugcagaagcgacugcaaugucgauauucaUUACUUUGGCAGCGCUGUGCUugccgaauuaagccuuugaguguucguaga
(((....((.(((((....((.((((..((((((((..((((((((((((.((((.((((..(.((((((......)))))).)..)))).)))).))))))))))))..)))))))).))))..))....))))).)))))...

Structure

---   uuuc  g     uaac  -c    uu        ua            c    c    uu c      aa 
   gcg    aa gcuca    cu  auuc  gcaagcac  cgcugccaaagu auga uguc  c uugcag  g
   |||    || |||||    ||  ||||  ||||||||  |||||||||||| |||| ||||  | ||||||   
   ugc    uu ugagu    ga  uaag  cguUCGUG  GCGACGGUUUCA Uacu auag  g aacguc  c
aga   ----  g     uucc  au    -c        UC            U    u    cu u      ag 

Annotation confidence Not enough data

Genome context

Chr17: 6851462-6851606 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1034

Mature ppt-miR1034

• Accession: MIMAT0005141
• Description: Physcomitrella patens ppt-miR1034 mature miRNA
• Sequence: 95 - UUACUUUGGCAGCGCUGUGCU - 115
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769