Stem-loop ppt-MIR1036

Accession

MI0005995

Description

Physcomitrella patens ppt-MIR1036 precursor miRNA

Sequence

acuguauguggcuugaacgccaauaucagUGUGGAGUCCGUAAUUAGCUGcgaaauucaauggcauuguggugguugcaagggcgaauuacaccaacgugugcacgcagcuuccuuuguugaauuucgcAGCUAAUUAAGGAUUCUACACagcuuggcguuuguauuguuauacagu
((((((((.....((((((((((...(.(((((((((((.(((((((((((((((((((...(((....((.((((((....((.....((((....))))))..)))))).))..)))))))))))))))))))))).))))))))))).).))))))))))......))))))))

Structure

        -uggcu          uau a           G                   aug   uugu  u      aagg  gaauu    c 
acuguaug      ugaacgccaa   c gUGUGGAGUCC UAAUUAGCUGcgaaauuca   gca    gg gguugc    gc     acac a
||||||||      ||||||||||   | ||||||||||| |||||||||||||||||||   |||    || ||||||    ||     ||||  
ugacauau      guuugcgguu   g CACAUCUUAGG AUUAAUCGAcgcuuuaagu   ugu    cc ucgacg    cg     ugug a
        uguuau          --c a           A                   ---   --uu  u      --ca  -----    c 

Annotation confidence Not enough data

Genome context

Chr20: 8674291-8674467 [+]

Mature ppt-miR1036-5p

• Accession: MIMAT0005143
• Description: Physcomitrella patens ppt-miR1036-5p mature miRNA
• Sequence: 30 - UGUGGAGUCCGUAAUUAGCUG - 50
• Evidence: experimental ; 454 [1]

Mature ppt-miR1036-3p

• Accession: MIMAT0005144
• Description: Physcomitrella patens ppt-miR1036-3p mature miRNA
• Sequence: 130 - AGCUAAUUAAGGAUUCUACAC - 150
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769