Stem-loop ppt-MIR1057

Accession

MI0006016

Description

Physcomitrella patens ppt-MIR1057 precursor miRNA

Sequence

cguugagucucacguuauguggagauuaucaacccccagcuagaacagaagaauauguauacuaUUCUUGUGUUCUAGCUGGGGGUugauaaugcaaacuagacaagauuucagua
..((((((((...(((..((....(((((((((((((((((((((((.(((((((.......))))))).)))))))))))))))))))))))....))..))).))).)))))..

Structure

cg     -   cac   au  ggag                       g       ug 
  uugag ucu   guu  gu    auuaucaacccccagcuagaaca aagaaua  u
  ||||| |||   |||  ||    ||||||||||||||||||||||| |||||||  a
  gacuu aga   cag  ca    uaauaguUGGGGGUCGAUCUUGU UUCUUau  u
au     u   --a   au  aacg                       G       ca 

Annotation confidence Not enough data

Genome context

Chr02: 19544887-19545002 [+]

Mature ppt-miR1057

• Accession: MIMAT0005175
• Description: Physcomitrella patens ppt-miR1057 mature miRNA
• Sequence: 65 - UUCUUGUGUUCUAGCUGGGGGU - 86
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769