Stem-loop ppt-MIR1063c

Accession

MI0006024

Description

Physcomitrella patens ppt-MIR1063c precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

accaagaauuuugccguguugcccacuuuCAUCUUGGAGUACUGCAUCUUcacaaccgucgcuuuuucaaaucugaauuccagucacugaagcucgggcuagauuuaagggcucuggggacgcaggaaggugaguucagugguacaaauaaaagaauuagugauaauuuucuggagcuuaguagucggauggcagagggaaaacaaaauuaguauacuugacuugcguuuuaaguguagauccaaauagauuuucaaaagaauagguccuguugucccucgaauugaagcucguuuuggaaucuuacggagacgaagaugcauuccuccaagaagugaguggguaacaggcuacaucaaacgg
............(((.((((((((((((.(.((((((((...(((((((((....((((.....(((((((.(((((((((..((.(((...((((((((.........))).)))))....)))))..).)))))))).............(((((((....)))))))...((((((....(((....))).((((((.((((.......(((((((((........)))))))))((((......))))(((....))).......)))).))))))......))))))..)))))))....))))....)))))))))...)))))))).).)))))))))))))))............

Structure

accaagaauuuu   g            u A        UAC         acaa    cgcuu       ----------------------------------------------------------------------------------------------------------------------------------------------------------u        - ag  a   -aag     -   aga 
            gcc uguugcccacuu C UCUUGGAG   UGCAUCUUc    ccgu     uuucaaa                                                                                                                                                           cugaauuc c  uc cug    cucgg gcu   u
            ||| |||||||||||| | ||||||||   |||||||||    ||||     |||||||                                                                                                                                                           |||||||| |  || |||    ||||| |||   u
            cgg acaaugggugag g agaaccuc   acguagaag    ggca     aagguuu                                                                                                                                                           gacuugag g  ag gac    ggguc cgg   u
ggcaaacuacau   -            u a        cuu         caga    -uucu       ugcucgaaguuaagcucccuguuguccuggauaagaaaacuuuuagauaaaccuagaugugaauuuugcguucaguucauaugauuaaaacaaaagggagacgguaggcugaugauucgaggucuuuuaauagugauuaagaaaauaaacauggu        u ga  -   gcag     u   gaa 

Annotation confidence Not enough data

Genome context

Chr21: 5128188-5128550 [-]

Mature ppt-miR1063c

• Accession: MIMAT0005184
• Description: Physcomitrella patens ppt-miR1063c mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769