Stem-loop ppt-MIR1063e

Accession

MI0006026

Description

Physcomitrella patens ppt-MIR1063e precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

caccgcaugcucgccuugcuggucacccuCAUCUUGGAGUACUGCAUCUUcacaucuguagcccuucaucuaagucucaggcagcacuagugcuguaguuucagccgaauucuugguauucgagaauuuaugaaugaggcacugagcacaccaaaagaggucagagauuggggauucuacugaugggcagaugcagaacugcaagaagcgagugggcagcaggcuauguucauucg
....(((((...((((.((((.((((.(.(.(((((.(((.((((((((((.((((.((((((((..((((..(((((((((((((....)))))).((((((..((((((((((.....)))))))))..)..)))))).))))).))(((......)))...)))).))))...)))).)))))).)))))))).))).))))).).).)))).))))))))))))).......

Structure

---cacc     cuc    u    g    c u A     G   A        -  a    u    ---    uc    -------------aa  -     gcagcacuagugcugua      gc --         g 
       gcaug   gccu gcug ucac c C UCUUG AGU CUGCAUCU Uc cauc guag   cccu  aucu               gu cucag                 guuuca  c  gaauucuug u
       |||||   |||| |||| |||| | | ||||| ||| |||||||| || |||| ||||   ||||  ||||               || |||||                 ||||||  |  ||||||||| a
       uguau   cgga cgac ggug g g agaac uca gacguaga gg guag cauc   gggg  uaga               ca gaguc                 cggagu  g  uuuaagagc u
gcuuacu     ---    -    g    a c a     g   a        c  -    u    uua    -u    gacuggagaaaacca  c     ----------------a      aa ua         u 

Annotation confidence Not enough data

Genome context

Chr22: 9283849-9284084 [+]

Clustered miRNAs

1 other miRNA is < 10 kb from ppt-MIR1063e

Mature ppt-miR1063e

• Accession: MIMAT0005186
• Description: Physcomitrella patens ppt-miR1063e mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769