Stem-loop ppt-MIR1063g

Accession

MI0006028

Description

Physcomitrella patens ppt-MIR1063g precursor miRNA

Gene family

MIPF0000381; MIR1063

Sequence

gacugcgaguucgcuuuguugcucacccuCAUCUUGGAGUACUGCAUCUUcacaucucuggguuucacaaucugccucagguuguuaaagugccggaguaaaauuguguuauuggauauucaguaaagaugggugcgaaaauggagucaauccaucauuugcauaguacuagagauaaaguguuuacacacuuaucauaguacaaaacucggggcacuugagcacaccauauggaaagaagguuugaaauucuugugaugggcagaugcagaacugcaagaagugagugggcaacaggcuauuuucgaaga
..((.((((...((((.(((((((((.(.(.(((((.(((.((((((((((.((((.(.(((((((((..(((.((...(((((((.(((((((.((((.........(((((((....)))))))......(((((((.(((((.....)))))..))))))).((((((..(((((.((((....))))))))).))))))...))))..))))))).)))).)))....))..)))..))..)))))))..).)))))).)))))))).))).))))).).).)))))))))))))....)))).)).

Structure

ga  g    -uuc    u         c u A     G   A        -  a    u -u       --  aa   -g  -uca   -    a       -g    aaaauuguguuauuggauauucaguaaagaugggugcgaaaauggagucaauccaucauuugcaua      ga     a    u 
  cu cgag    gcuu guugcucac c C UCUUG AGU CUGCAUCU Uc cauc c  ggguuuc  ac  ucu  cc    ggu uguu aagugcc  gagu                                                                  guacua  gauaa gugu u
  || ||||    |||| ||||||||| | | ||||| ||| |||||||| || |||| |  |||||||  ||  |||  ||    ||| |||| |||||||  ||||                                                                  ||||||  ||||| ||||  
  ga gcuu    cgga caacgggug g g agaac uca gacguaga gg guag g  cuuaaag  ug  aga  gg    cca acga uucacgg  cuca                                                                  caugau  cuauu caca a
-a  a    uuau    -         a u a     g   a        c  -    u uu       uu  ga   aa  uaua   c    g       gg    ---------------------------------------------------------------aaa      -a     -    c 

Annotation confidence Not enough data

Genome context

Chr19: 10199265-10199575 [+]

Mature ppt-miR1063g

• Accession: MIMAT0005188
• Description: Physcomitrella patens ppt-miR1063g mature miRNA
• Sequence: 30 - CAUCUUGGAGUACUGCAUCUU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769