Stem-loop ppt-MIR1065

Accession

MI0006031

Description

Physcomitrella patens ppt-MIR1065 precursor miRNA

Sequence

gauccauuguacugauuccgaaggagaagACAGUCUCUGACUUCUCGCAGagugagccuguuucugcaguacuggaacgauugguugagaccacuggcacuaggcaaaaaccuuguuucuggugacuuggucugggaucguacagagcugcagaacgcuugacaugcgggaaaucagagacagucgcuuccuuugguuucuaauugucacca
.............((..(((((((((..(((.((((((((.((((((((...(((((..(((.(((((((.(((..((((((.....((((((..((((((((((((.....))))..)))))).))))))))..)))))).))).)))))))))))))))...)))))))).)))))))).)))..)))))))))..))............

Structure

gauccauuguacu  uu         aa   A        C        Gag     cu   u       a   ga      gguug      cu  -      --    a 
             ga  ccgaaggag  gAC GUCUCUGA UUCUCGCA   ugagc  guu cugcagu cug  acgauu     agacca  gg cacuag  gcaa a
             ||  |||||||||  ||| |||||||| ||||||||   |||||  ||| ||||||| |||  ||||||     ||||||  || ||||||  |||| a
             cu  gguuuccuu  cug cagagacu aagggcgu   guucg  caa gacgucg gac  ugcuag     ucuggu  uc gugguc  uguu c
-accacuguuaau  uu         cg   a        a        aca     --   -       a   -a      ---gg      --  a      uu    c 

Annotation confidence Not enough data

Genome context

Chr07: 9473974-9474185 [+]

Mature ppt-miR1065

• Accession: MIMAT0005192
• Description: Physcomitrella patens ppt-miR1065 mature miRNA
• Sequence: 30 - ACAGUCUCUGACUUCUCGCAG - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769