Stem-loop ppt-MIR1072

Accession

MI0006038

Description

Physcomitrella patens ppt-MIR1072 precursor miRNA

Sequence

aauuuguucuaaucuuaugagauggauauguucaagcuucuaguuucacaaugugauaauuuuaaauaauuguuuuuguaaucaaaguaugaauuuuaugauuuuauauuucauucuaauuucuuaaaaauaauguugguuguuuuuguagaauuauuuuauaaauacauauuguaaaaucucuauguuauaugaaaaaauaucuuuuaaaauuuaaaucccaauaaaaauaugacaauacaauuauuuugauauUGCAUUGUGUUAUUUGAAGCUUGAaaauaggccaucuuuaaaauuagaacuaau
.....((((((((.(((.(((((((.(((.((((((((((.(((..((((((((((((.....((((((((((...........(((((((((.........))))))))).........((((((((((((((....)))))))))).))))..(((((((((.......))))))))).....((((((((............(((((...)))))...........))))))))..))))))))))...))))))))))))..))).)))))))))).)))..)))))))))).))))))))....

Structure

aauuu        c   u       -a   g          u   uu            auuuu          ---------------------------------------uuuuguaaucaaaguaugaauuuuaugauuuuauauuucauucuaau    -          g 
     guucuaau uua gagaugg  uau uucaagcuuc agu  cacaaugugaua     aaauaauugu                                                                                      uucu uaaaaauaau u
     |||||||| ||| |||||||  ||| |||||||||| |||  ||||||||||||     ||||||||||                                                                                      |||| ||||||||||  
     caagauua aau uucuacc  aua aAGUUCGAAG UUA  GUGUUACGUuau     uuuauuaaca                                                                                      aaga guuuuuguug u
-uaau        a   -       gg   a          U   UU            --agu          uaacaguauaaaaauaacccuaaauuuaaaauuuucuauaaaaaaguauauuguaucucuaaaauguuauacauaaauauuuuauu    u          g 

Annotation confidence Not enough data

Genome context

Unknown

Mature ppt-miR1072

• Accession: MIMAT0005201
• Description: Physcomitrella patens ppt-miR1072 mature miRNA
• Sequence: 256 - UGCAUUGUGUUAUUUGAAGCUUGA - 279
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769