Stem-loop ppt-MIR1078

Accession

MI0006044

Description

Physcomitrella patens ppt-MIR1078 precursor miRNA

Sequence

caacaacaaaacaaaauaccuugaugcuuUUUGGAUGAUUCAAUUGUGAUaaaaacuaguuuaucacaauugaauuaucuaaauaucuucaauguguuuuuauuacaacua
............(((((((.((((.....((((((((((((((((((((((((......)))))))))))))))))))))))).....)))).)))))))...........

Structure

caacaacaaaac       c    ugcuu                        aa 
            aaaauac uuga     UUUGGAUGAUUCAAUUGUGAUaaa  c
            ||||||| ||||     ||||||||||||||||||||||||   
            uuuugug aacu     aaaucuauuaaguuaacacuauuu  u
-aucaacauuau       u    ucuau                        ga 

Annotation confidence Not enough data

Genome context

Chr06: 18848953-18849063 [+]

Mature ppt-miR1078

• Accession: MIMAT0005210
• Description: Physcomitrella patens ppt-miR1078 mature miRNA
• Sequence: 30 - UUUGGAUGAUUCAAUUGUGAU - 50
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769