Stem-loop smo-MIR1081

Accession

MI0006064

Description

Selaginella moellendorffii smo-MIR1081 precursor miRNA

Sequence

ucuuuugugaggcuugccuuugauucucugagcucugggaggugugauucccucaccuccuagcucugagaaucaacagcaagccucacacacaucggcuguucuuugaucucgucuugcaggcgcgggauccaggacuugugaggguugccuuugauuuucugagcucucggaagugugauucccucaccaccgagcucugcacacaucgagaucuuuggcuguucuuugaucucgucuugcaggcgcgcgggauccaggagcagcgaucuuugUGAGGCUUGCCUUUGAUUCUCugagcucugggaggugugauucccucagcuccuagcuuugagagucaauugcaagccucgcacgcaucgaga
.....((((((((((((..(((((((((.(((((..(((((.((.((.((...(((((((((((((.(((((((((..((((((((((((...((((.((((((((.((((((((((((((((.((((((((.(((((...((((((((....(((((.....((((((..((..(((.(.....).)))..)))))))).......)))))))))))))...)))))..))))))))))))))))...)))))))).))))))))))))...))))))))))))..))))))))).)))))..)))))))).)).))...)).)))))))))).)))))))))..))))))))))))..........

Structure

-----ucuuu            cu         u     cu     g  --u  u  ccu        --     u         ca            cac    g        u        ---        c        -c     uug        gccu     --uuucu      uc  aa   u a 
          ugugaggcuugc  uugauucuc gagcu  gggag ug   ga uc   caccuccu  agcuc gagaaucaa  gcaagccucaca   aucg cuguucuu gaucucgu   cuugcagg gcgggauc  aggac   ugaggguu    uugau       gagcuc  gg  gug g u
          ||||||||||||  ||||||||| |||||  ||||| ||   || ||   ||||||||  ||||| |||||||||  ||||||||||||   |||| |||||||| ||||||||   |||||||| ||||||||  |||||   ||||||||    |||||       ||||||  ||  ||| | u
          acgcuccgaacg  aacugagag uucga  uccuc ac   cu ag   guggaggg  ucgag CUCUUAGUU  CGUUCGGAGUgu   uagc gacgagga cuagggcg   ggacguuc ugcucuag  ucuug   guuucuag    agcua       cucgag  cc  cac c c
agagcuacgc            uu         u     --     g  ucc  u  --u        uc     u         UC            uuc    -        c        cgc        -        uu     ucg        ----     cacacgu      --  ac   u c 

Annotation confidence Not enough data

Genome context

Unknown

Mature smo-miR1081

• Accession: MIMAT0005231
• Description: Selaginella moellendorffii smo-miR1081 mature miRNA
• Sequence: 276 - UGAGGCUUGCCUUUGAUUCUC - 296
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769