Stem-loop smo-MIR1097

Accession

MI0006084

Description

Selaginella moellendorffii smo-MIR1097 precursor miRNA

Sequence

gcucaagucaUAGCCAUUGUUGUUGUUGGAAuuccucugaaaagacuccuagccuccuuggcagccauagcaaaaaugccauuaauuuuuuugucgacauucuucuuccagccagauuauccauuagugggaguggcgggaucacaagaaccaaaggcagucuucuuccauagaucauccaucaguggcaguguugggaauagggaacguggcaagcuugguagcagugccucuugggcucuugugaucuugccacucccacugauggaugauuuggcuggaagaagaaugucgacaaaggaaucaacggcacuguugcuauaucugcuaaggaggcuagaaguccuucaaaaggaauuccaacagcaacaauggcuauga
.......(((((((((((((((((((((((((((((.((((..((((.((((((((((((((((..(((((((...((((.((.(((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((((.((((((((((((...((((.((.....((((.((.......)).))))..)).))))...)))..(((....)))..))))).))))..))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))))).)).))))...)))))))..)))))))))))))))).)))).))))..)))))))))))))))))))))))))))))

Structure

gcucaag                             -c    aa    c                cc       aaa    a  a                                                                 -a    -     --------------   uuc    a  gauca    u  gu 
       ucaUAGCCAUUGUUGUUGUUGGAAuuccu  ugaa  gacu cuagccuccuuggcag  auagcaa   ugcc uu auuuuuuugucgacauucuucuuccagccagauuauccauuagugggaguggcgggaucacaaga  ccaa aggca              guc   uucc ua     ucca ca  g
       |||||||||||||||||||||||||||||  ||||  |||| ||||||||||||||||  |||||||   |||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||  |||| |||||              |||   |||| ||     |||| ||  g
       aguaucgguaacaacgacaaccuuaagga  acuu  cuga gaucggaggaaucguc  uaucguu   acgg aa uaaggaaacagcuguaagaagaaggucgguuuaguagguagucacccucaccguucuaguguucu  gguu uccgu              cgg   aagg au     gggu gu  c
-------                             aa    -c    a                ua       guc    c  c                                                                 cg    c     gacgaugguucgaa   ugc    g  ---aa    u  ga 

Annotation confidence Not enough data

Genome context

Unknown

Mature smo-miR1097

• Accession: MIMAT0005253
• Description: Selaginella moellendorffii smo-miR1097 mature miRNA
• Sequence: 11 - UAGCCAUUGUUGUUGUUGGAA - 31
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769