Stem-loop ppt-MIR477b

Accession

MI0006202

Description

Physcomitrella patens ppt-MIR477b precursor miRNA

Gene family

MIPF0000216; MIR477

Literature search

1 open access papers mention ppt-MIR477b
(11 sentences)

Sequence

auguguuggaacuugggaagcaggugcuugaucCUCUCCCUCAAAGGCUUCCAacagcaugagcuaguuuuagugucucaaauauugucuguugaggcuagcuccuguucagaucuguuagaagccucugugggagaggagcaaucagcugcugaguggcaccucugauc
..(((((...((((....(((((.((.(((.(((((((((.((.(((((((.(((((((.(((((((((((((.(.(.........).)..))))))))))))).)).......))))).))))))).)).))))))))).))).)).))))))))))))))........

Structure

------au     gga    ggga     g  c   a         U  A       C     -------  u             -u u uca 
        guguu   acuu    agcag ug uug ucCUCUCCC CA AGGCUUC Aacag       ca gagcuaguuuuag  g c   a
        |||||   ||||    ||||| || ||| ||||||||| || ||||||| |||||       || |||||||||||||  | |   a
        cacgg   ugag    ucguc ac aac aggagaggg gu uccgaag uuguc       gu cucgaucggaguu  c g   u
cuagucuc     ---    ----     g  u   g         u  c       a     uagacuu  c             gu u uua 

Annotation confidence Not enough data

Genome context

Chr21: 14870936-14871105 [-]

Mature ppt-miR477b

• Accession: MIMAT0005375
• Description: Physcomitrella patens ppt-miR477b mature miRNA
• Sequence: 34 - CUCUCCCUCAAAGGCUUCCA - 53
• Evidence: experimental ; 454 [1]

References

1. PubMed ID: 17601824
   Common functions for diverse small RNAs of land plants
   "Axtell MJ, Snyder JA, Bartel DP"
   "Plant Cell (2007) 19:1750-1769