miRBase entry: mcmv-mir-m88-1

Stem-loop mcmv-mir-m88-1


Accession
MI0006259
Description
Mouse cytomegalovirus mcmv-mir-m88-1 precursor miRNA


Sequence

AUGACCGACCCCCUGACAUCGGcggcgcgagauuuuuaugccgCAGAAGUCGAUGUCGGGGUCUcggucgu
((((((((..(((((((((((((..((((..((....))..))).)..)))))))))))))..))))))))

Structure
        CC             gg -   ag  u 
AUGACCGA  CCCUGACAUCGGc  c gcg  au u
||||||||  |||||||||||||  | |||  ||  
ugcuggcU  GGGGCUGUAGCUG  G Cgc  ua u
        CU             AA A   cg  u 


Annotation confidence Not enough data
Do you think this miRNA is real?

Genome context
Unknown

Database links

Mature mcmv-miR-m88-1-5p

Accession MIMAT0005551
Description Mouse cytomegalovirus mcmv-miR-m88-1-5p mature miRNA
Sequence 1 - AUGACCGACCCCCUGACAUCGG - 22
Evidence experimental
cloned [2]

Mature mcmv-miR-m88-1-3p

Accession MIMAT0005552
Description Mouse cytomegalovirus mcmv-miR-m88-1-3p mature miRNA
Sequence 44 - CAGAAGUCGAUGUCGGGGUCU - 64
Evidence experimental
cloned [1-2]

References

  1. PubMed ID: 17942535
    Mouse cytomegalovirus microRNAs dominate the cellular small RNA profile during lytic infection and show features of posttranscriptional regulation
    "Dolken L, Perot J, Cognat V, Alioua A, John M, Soutschek J, Ruzsics Z, Koszinowski U, Voinnet O, Pfeffer S"
    "J Virol (2007) 81:13771-13782

  2. PubMed ID: 17928340
    Discrete clusters of virus-encoded micrornas are associated with complementary strands of the genome and the 7.2-kilobase stable intron in murine cytomegalovirus
    "Buck AH, Santoyo-Lopez J, Robertson KA, Kumar DS, Reczko M, Ghazal P"
    "J Virol (2007) 81:13761-13770