Stem-loop sequence hsa-mir-548l

Accession

MI0006361 (change log)

Symbol

HGNC:MIR548L

Description

Homo sapiens miR-548l stem-loop

Gene family

MIPF0000317; mir-548

Literature search

42 open access papers mention hsa-mir-548l
(143 sentences)

Stem-loop

   --uauua          a     u      g         aga 
5'        gguuggugca aagua uugcgg uuuugucgu   a
          |||||||||| ||||| |||||| |||||||||    
3'        ccaaccacgu uucau gacguc aaaacggua   a
   ucguaaa          g     u      a         aug 

Deep sequencing

6084 reads, 8.73 reads per million, 126 experiments

Confidence

Annotation confidence: not enough data

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr11: 94466495-94466580 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000396436 ; RP11-867G2.8-001; intron 1

  OTTHUMT00000396437 ; RP11-867G2.8-002; intron 1

  ENST00000536540 ; RP11-867G2.8-001; intron 1

  ENST00000537874 ; RP11-867G2.8-002; intron 1

  antisense

  OTTHUMT00000397842 ; AMOTL1-007; intron 2

  ENST00000299004 ; AMOTL1-007; intron 2

Database links

• EntrezGene:MIR548L
• EntrezGene:MIR548L
• HGNC:MIR548L
• RNAcentral:URS000075B8B6_9606
• miRBase Tracker:MI0006361

Mature sequence hsa-miR-548l

• Accession: MIMAT0005889
• Sequence: 15 - aaaaguauuugcggguuuuguc - 36
• Deep sequencing: 2117 reads, 109 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS0000260A3A_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548l
  • TargetScanVert:hsa-miR-548l
  • miRDB:hsa-miR-548l
  • microrna.org:hsa-miR-548l

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).