Stem-loop sequence hsa-mir-548g

Accession

MI0006395 (change log)

Symbol

HGNC:MIR548G

Description

Homo sapiens miR-548g stem-loop

Gene family

MIPF0000317; mir-548

Literature search

41 open access papers mention hsa-mir-548g
(142 sentences)

Stem-loop

   -agu     ga  a                      u  auuac 
5'     uauua  uu gugcaaaaguaauugcaguuuu gc     g
       |||||  || |||||||||||||||||||||| ||     u
3'     auaau  aa cauguuuucauuaaugucaaaa cg     u
   cuuc     ac  c                      -  guauc 

Deep sequencing

4370 reads, 0.833 reads per million, 120 experiments

Confidence

Annotation confidence: high

Feedback: Do you believe this miRNA is real?

Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr4: 147344629-147344717 [-]
• Overlapping transcripts:

  sense

  OTTHUMT00000364919 ; SLC10A7-008; intron 3

  OTTHUMT00000364913 ; SLC10A7-002; intron 4

  OTTHUMT00000364912 ; SLC10A7-001; intron 5

  OTTHUMT00000366932 ; SLC10A7-009; intron 5

  ENST00000507560 ; SLC10A7-008; intron 3

  ENST00000432059 ; SLC10A7-002; intron 4

  ENST00000264986 ; SLC10A7-201; intron 4

  ENST00000335472 ; SLC10A7-001; intron 5

  ENST00000507030 ; SLC10A7-009; intron 5

  ENST00000394062 ; SLC10A7-202; intron 5

Database links

• EntrezGene:MIR548G
• EntrezGene:MIR548G
• HGNC:MIR548G
• RNAcentral:URS000075D0BD_9606
• miRBase Tracker:MI0006395

Mature sequence hsa-miR-548g-5p

• Accession: MIMAT0022722
• Sequence: 15 - ugcaaaaguaauugcaguuuuug - 37
• Deep sequencing: 3949 reads, 120 experiments
• Evidence: not experimental
• Database links:
  • RNAcentral:URS00004BC299_9606
• Predicted targets:
  • TargetMiner:hsa-miR-548g-5p
  • TargetScanVert:hsa-miR-548g-5p
  • miRDB:hsa-miR-548g-5p

Mature sequence hsa-miR-548g-3p

• Accession: MIMAT0005912
• Previous IDs: hsa-miR-548g
• Sequence: 54 - aaaacuguaauuacuuuuguac - 75
• Deep sequencing: 419 reads, 56 experiments
• Evidence: experimental; Illumina [1]
• Predicted targets:
  • TargetMiner:hsa-miR-548g-3p
  • TargetScanVert:hsa-miR-548g-3p
  • miRDB:hsa-miR-548g-3p
  • microrna.org:hsa-miR-548g-3p

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).