Stem-loop sequence hsa-mir-1268a

Accession

MI0006405 (change log)

Previous IDs

hsa-mir-1268

Symbol

HGNC:MIR1268A

Description

Homo sapiens miR-1268a stem-loop

Gene family

MIPF0000946; mir-1268

Literature search

16 open access papers mention hsa-mir-1268a
(25 sentences)

Stem-loop

   --     ggg  u      g        
5'   uagcc   cg gguggu ggggccu 
     |||||   || |||||| |||||| g
3'   gucgg   gu ucaucg cccuggu 
   ga     -ag  u      a        

Deep sequencing

7121 reads, 95.8 reads per million, 167 experiments

Confidence

Annotation confidence: not enough data

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Genome context

• Coordinates (GRCh38; GCA_000001405.15): chr15: 22225278-22225329 [-]
• Overlapping transcripts:

  intergenic

Database links

• EntrezGene:MIR1268
• HGNC:MIR1268A
• RNAcentral:URS000075D69C_9606
• miRBase Tracker:MI0006405

Mature sequence hsa-miR-1268a

• Accession: MIMAT0005922
• Previous IDs: hsa-miR-1268
• Sequence: 5 - cgggcguggugguggggg - 22
• Deep sequencing: 5469 reads, 167 experiments
• Evidence: experimental; Illumina [1]
• Database links:
  • RNAcentral:URS00005A8A8D_9606
• Predicted targets:
  • TargetMiner:hsa-miR-1268a
  • TargetScanVert:hsa-miR-1268a
  • miRDB:hsa-miR-1268a
  • microrna.org:hsa-miR-1268a

References

1. PMID:18285502 "Application of massively parallel sequencing to microRNA profiling and discovery in human embryonic stem cells" Morin RD, O'Connor MD, Griffith M, Kuchenbauer F, Delaney A, Prabhu AL, Zhao Y, McDonald H, Zeng T, Hirst M, Eaves CJ, Marra MA Genome Res. 18:610-621(2008).