Stem-loop vvi-MIR160c

Accession

MI0006498

Description

Vitis vinifera vvi-MIR160c precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

4 open access papers mention vvi-MIR160c
(13 sentences)

Sequence

168 reads, 12 reads per million, 2 experiments

aaauggguugUGCCUGGCUCCCUGUAUGCCAcacguagagaccacucccuuucccggauuggcuauuugcggguggcgugcgaggagccaagcauacccaccauuc
...(((((.((((.(((((((.((((((((((.((((((..(((.(((.......))).)))...)))))).)))))))))).))))))).)))))))))......

Structure

---aaa     u    C       C          a      -ga   c   cu 
      ugggu gUGC UGGCUCC UGUAUGCCAc cguaga   cca ucc  u
      ||||| |||| ||||||| |||||||||| ||||||   ||| |||  u
      accca uacg accgagg gcgugcggug gcguuu   ggu agg  c
cuuacc     -    a       a          g      auc   u   cc 

Annotation confidence Not enough data

Genome context

chr10: 11745661-11745766 [+]

Mature vvi-miR160c

• Accession: MIMAT0005653
• Description: Vitis vinifera vvi-miR160c mature miRNA
• Sequence: 11 - UGCCUGGCUCCCUGUAUGCCA - 31
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558