miRBase entry: vvi-MIR162

Stem-loop vvi-MIR162


Accession
MI0006502
Description
Vitis vinifera vvi-MIR162 precursor miRNA
Gene family
MIPF0000127; MIR162_1

Literature search
4 open access papers mention vvi-MIR162
(26 sentences)

Sequence

8030 reads, 539 reads per million, 2 experiments
ugaagucacuggaugcagcgguucaucgaucucuuccugaaauuguugugaaaaaagcagaucaagaaucggUCGAUAAACCUCUGCAUCCAGcguucacucc
((((..(.((((((((((.((((.(((((((..(((.(((..(((((........))))).))).)))..))))))).)))).)))))))))).)))))....

Structure
----    gu a          c    c       uc   c   aa     gug 
    ugaa  c cuggaugcag gguu aucgauc  uuc uga  uuguu   a
    ||||  | |||||||||| |||| |||||||  ||| |||  |||||    
    acuu  g GACCUACGUC CCAA UAGCUgg  aag acu  gacga   a
ccuc    -- c          U    A       cu   a   -a     aaa 


Annotation confidence Not enough data
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Genome context
chr17: 4716519-4716621 [+]

Database links

Mature vvi-miR162

Accession MIMAT0005657
Description Vitis vinifera vvi-miR162 mature miRNA
Sequence 73 - UCGAUAAACCUCUGCAUCCAG - 93
Evidence experimental
Array [2], Illumina [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558