Stem-loop vvi-MIR166g

Accession

MI0006513

Description

Vitis vinifera vvi-MIR166g precursor miRNA

Gene family

MIPF0000004; MIR166

Literature search

8 open access papers mention vvi-MIR166g
(15 sentences)

Sequence

2212830 reads, 148377 reads per million, 2 experiments

aacaguugaggggaauguugucugguucgagauccuucguaugaagcucaagcagcguuugaaugauuUCGGACCAGGCUUCAUUCCCCucaacccaaaa
....(((((((((((((..(((((((((((((((.((((.(((..((....))..))).)))).)))))))))))))))..)))))))))))))......

Structure

--aaca             uu               c    u   aa  u 
      guugaggggaaug  gucugguucgagauc uucg aug  gc c
      |||||||||||||  ||||||||||||||| |||| |||  ||  
      caacuCCCCUUAC  CGGACCAGGCUuuag aagu ugc  cg a
aaaacc             UU               u    u   ga  a 

Annotation confidence Not enough data

Genome context

chr7: 453858-453957 [-]

Mature vvi-miR166g

• Accession: MIMAT0005668
• Description: Vitis vinifera vvi-miR166g mature miRNA
• Sequence: 69 - UCGGACCAGGCUUCAUUCCCC - 89
• Evidence: experimental ; Array [2], Illumina [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558