Stem-loop sequence vvi-MIR395a

AccessionMI0006556 (change log)
DescriptionVitis vinifera miR395a stem-loop
Gene family MIPF0000016; MIR395
Literature search

6 open access papers mention vvi-MIR395a
(30 sentences)

Stem-loop
   --gucc  ua         ug u       c       - uucgcu 
5'       cc  gaguucccu  a cacuuca uagggag c      a
         ||  |||||||||  | ||||||| ||||||| |      g
3'       gg  cucaagggg  u gugaagu auccuuc g      u
   agccau  uc         gu u       c       a uaauuu 
Get sequence
Deep sequencing
7219 reads, 450 reads per million, 2 experiments
Confidence Annotation confidence: not enough data
Feedback: Do you believe this miRNA is real?
Genome context
Coordinates (12X; GCA_000003745.2) Overlapping transcripts
chr1: 6527928-6528019 [+]
intergenic
Clustered miRNAs
< 10kb from vvi-MIR395a
vvi-MIR395achr1: 6527928-6528019 [+]
vvi-MIR395kchr1: 6536780-6536871 [+]
Database links

Mature sequence vvi-miR395a

Accession MIMAT0005711
Sequence

62 - 

cugaaguguuugggggaacuc

 - 82

Get sequence
Deep sequencing7153 reads, 2 experiments
Evidence experimental; Array [2]

References

1
PMID:17721507 "The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla" Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro Nature. 449:463-467(2007).
2
PMID:19939267 "High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera" Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pe ME, Horner DS BMC Genomics. 10:558(2009).