miRBase entry: vvi-MIR396a

Stem-loop vvi-MIR396a


Accession
MI0006569
Description
Vitis vinifera vvi-MIR396a precursor miRNA
Gene family
MIPF0000047; MIR396

Literature search
7 open access papers mention vvi-MIR396a
(28 sentences)

Sequence

5340 reads, 357 reads per million, 2 experiments
uccugucaugcuuUUCCACAGCUUUCUUGAACUAcuuuuccaucuaccuguuugaugaucuucuucauaaggagugugaaauagaagcucaagaaagcugugggaggacauggcaa
...(((((((.(((((((((((((((((((.((.((((((((.((.(((...(((.((...)).)))..))))))).)))).)).)).))))))))))))))))))).))))))).

Structure
ucc       c                   A  A  -    -  u  a   guu   u  u 
   ugucaug uuUUCCACAGCUUUCUUGA CU cu uuuc ca cu ccu   uga ga  
   ||||||| ||||||||||||||||||| || || |||| || || |||   ||| || c
   acgguac ggagggugucgaaagaacu ga ga aaag gu ga gga   acu cu  
--a       a                   c  a  u    u  -  -   -au   u  u 


Annotation confidence Not enough data
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Genome context
chr9: 7372522-7372637 [-]

Database links

Mature vvi-miR396a

Accession MIMAT0005724
Description Vitis vinifera vvi-miR396a mature miRNA
Sequence 14 - UUCCACAGCUUUCUUGAACUA - 34
Evidence experimental
Array [2]

References

  1. PubMed ID: 17721507
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
    "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
    "Nature (2007) 449:463-467

  2. PubMed ID: 19939267
    High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
    Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
    BMC Genomics (2009) 10:558