Stem-loop vvi-MIR399a

Accession

MI0006573

Description

Vitis vinifera vvi-MIR399a precursor miRNA

Literature search

5 open access papers mention vvi-MIR399a
(12 sentences)

Sequence

47 reads, 3 reads per million, 2 experiments

gagaauaacagugugauucuccuuuggcagagauaucacgcauggaguagaaggcgguagcugcucUGCCAAAGGAGAAUUGCCCUGuuauucaauu
..(((((((((.((((((((((((((((((((......(((.(........).))).......)))))))))))))))))))).)))))))))....

Structure

--ga         u                    -auauca   a gga 
    gaauaacag gugauucuccuuuggcagag       cgc u   g
    ||||||||| ||||||||||||||||||||       ||| |    
    cuuauuGUC CGUUAAGAGGAAACCGUcuc       gcg a   u
uuaa         C                    gucgaug   g aga 

Annotation confidence Low

Genome context

chr10: 2989450-2989546 [+]

Clustered miRNAs

5 other miRNAs are < 10 kb from vvi-MIR399a

Mature vvi-miR399a

• Accession: MIMAT0005728
• Description: Vitis vinifera vvi-miR399a mature miRNA
• Sequence: 67 - UGCCAAAGGAGAAUUGCCCUG - 87
• Evidence: experimental ; Array [2]

References

1. PubMed ID: 17721507
   The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla
   "Jaillon O, Aury JM, Noel B, Policriti A, Clepet C, Casagrande A, Choisne N, Aubourg S, Vitulo N, Jubin C, Vezzi A, Legeai F, Hugueney P, Dasilva C, Horner D, Mica E, Jublot D, Poulain J, Bruyere C, Billault A, Segurens B, Gouyvenoux M, Ugarte E, Cattonaro"
   "Nature (2007) 449:463-467


2. PubMed ID: 19939267
   High throughput approaches reveal splicing of primary microRNA transcripts and tissue specific expression of mature microRNAs in Vitis vinifera
   Mica E, Piccolo V, Delledonne M, Ferrarini A, Pezzotti M, Casati C, Del Fabbro C, Valle G, Policriti A, Morgante M, Pesole G, Pè ME, Horner DS
   BMC Genomics (2009) 10:558