Stem-loop osa-MIR1430

Accession

MI0006970

Description

Oryza sativa osa-MIR1430 precursor miRNA

Gene family

MIPF0000832; MIR169_5

Literature search

6 open access papers mention osa-MIR1430
(9 sentences)

Sequence

72 reads, 54 reads per million, 2 experiments

augaggagauugccucuguuagccaagaauggcuugccuaucuccacuauuugguucaucacuggaacacacuugggguucucagaugguggaugaaauauggaagaUGGUGAGCCUUCCUGGCUAAGagagugauucucau
.....((((.(..((((.(((((((.(((.((((((((.(((((((.(((((.(((((((((((((((.(......))))).))).)))))))).)))))))).))))))))))))))).))))))).))))..).))))..

Structure

augag    u gc    g       a   u        u    -   c     g        -   -    a ac 
     gaga u  cucu uuagcca gaa ggcuugcc aucu cca uauuu guucauca cug gaac c  u
     |||| |  |||| ||||||| ||| |||||||| |||| ||| ||||| |||||||| ||| |||| |   
     cucu a  gaga AAUCGGU CUU CCGAGUGG Uaga ggu auaaa uagguggu gac cuug g  u
---ua    u gu    G       C   -        -    a   -     g        a   u    - gg 

Annotation confidence Not enough data

Genome context

Chr12: 6825011-6825152 [-]

Mature osa-miR1430

• Accession: MIMAT0005964
• Description: Oryza sativa osa-miR1430 mature miRNA
• Sequence: 108 - UGGUGAGCCUUCCUGGCUAAG - 128
• Evidence: experimental ; MPSS [1], Northern [1], cloned [2]

References

1. PubMed ID: 18312648
   Identification of novel and candidate miRNAs in rice by high throughput sequencing
   Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK
   BMC Plant Biol (2008) 8:25


2. PubMed ID: 18353984
   Genome-wide analysis for discovery of rice microRNAs reveals natural antisense microRNAs (nat-miRNAs)
   "Lu C, Jeong DH, Kulkarni K, Pillay M, Nobuta K, German R, Thatcher SR, Maher C, Zhang L, Ware D, Liu B, Cao X, Meyers BC, Green PJ"
   "Proc Natl Acad Sci U S A (2008) 105:4951-4956