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Identification of novel and candidate miRNAs in rice by high throughput sequencing |
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|---|---|
| PubMed ID | 18312648 |
| Authors | Sunkar R, Zhou X, Zheng Y, Zhang W, Zhu JK |
| Journal | BMC Plant Biol |
| Volume | 8 |
| Pages | 25 |
| Name | Accession | RPM | Chromosome | Start | End | Strand | Confidence |
|---|---|---|---|---|---|---|---|
| osa-MIR167a | MI0000676 | 55831 | Chr12 | 25476808 | 25476948 | + | High |
| osa-MIR1423 | MI0006963 | 587 | Chr4 | 19715117 | 19715252 | + | Low |
| osa-MIR1425 | MI0006965 | 1196 | Chr5 | 8862149 | 8862250 | + | High |
| osa-MIR1427 | MI0006967 | 0 | Chr8 | 9192581 | 9192837 | + | - |
| osa-MIR1428a | MI0006968 | 0 | Chr1 | 13160777 | 13160896 | + | - |
| osa-MIR1429 | MI0006969 | 387 | Chr8 | 2036953 | 2037072 | - | High |
| osa-MIR1430 | MI0006970 | 54 | Chr12 | 6825011 | 6825152 | - | - |
| osa-MIR1431 | MI0006971 | 24 | Chr1 | 4766320 | 4766559 | - | - |
| osa-MIR1432 | MI0006972 | 629 | Chr7 | 23401702 | 23401810 | - | - |
| osa-MIR169r | MI0006973 | 69 | Chr3 | 35782416 | 35782544 | + | High |
| osa-MIR444c | MI0006975 | 4181 | None | None | - | ||
| osa-MIR444d | MI0006976 | 455 | None | None | - | ||
| osa-MIR444e | MI0006977 | 891 | None | None | - | ||
| osa-MIR444f | MI0006978 | 120 | None | None | - | ||
| osa-MIR810b | MI0006986 | 306 | Chr11 | 959574 | 959796 | - | - |
| osa-MIR1435 | MI0007021 | 0 | Chr1 | 29289280 | 29289462 | - | - |
| osa-MIR1436 | MI0007022 | 60 | Chr1 | 20316586 | 20316746 | - | - |
| osa-MIR1437a | MI0007024 | 61 | Chr8 | 3955902 | 3956089 | + | - |
| osa-MIR1438 | MI0007025 | None | Chr10 | 8429612 | 8429798 | + | - |
| osa-MIR1440a | MI0007028 | 33 | Chr9 | 5980506 | 5980694 | - | - |
| osa-MIR1441 | MI0007029 | 232 | Chr12 | 19485741 | 19485920 | - | Low |
| osa-MIR1442 | MI0007030 | 38 | Chr7 | 27589072 | 27589256 | + | - |
| osa-MIR1439 | MI0007031 | 16 | Chr12 | 10074109 | 10074280 | + | - |
| osa-MIR156a | MI0000653 | 257272 | Chr1 | 22524147 | 22524246 | - | - |
| osa-MIR156b | MI0000654 | 258339 | Chr1 | 4666341 | 4666516 | + | High |
| osa-MIR156c | MI0000655 | 258287 | Chr1 | 4665975 | 4666123 | + | High |
| osa-MIR156d | MI0000656 | 375099 | Chr2 | 4512884 | 4513012 | - | - |
| osa-MIR156e | MI0000657 | 257257 | Chr4 | 25026327 | 25026430 | - | - |
| osa-MIR156f | MI0000658 | 374943 | Chr8 | 21478230 | 21478415 | + | High |
| osa-MIR156g | MI0000659 | 258296 | Chr9 | 15065253 | 15065368 | + | High |
| osa-MIR156h | MI0000660 | 374943 | Chr8 | 21491232 | 21491417 | + | High |
| osa-MIR156i | MI0000661 | 257274 | Chr2 | 24119995 | 24120084 | - | - |
| osa-MIR156j | MI0000662 | 374978 | Chr6 | 26554795 | 26554959 | + | High |
| osa-MIR160a | MI0000663 | 392 | Chr2 | 3511585 | 3511672 | - | High |
| osa-MIR160b | MI0000664 | 392 | Chr6 | 28081020 | 28081158 | + | High |
| osa-MIR160c | MI0000665 | 321 | Chr8 | 1707568 | 1707666 | + | High |
| osa-MIR160d | MI0000666 | 299 | Chr3 | 32454988 | 32455129 | + | - |
| osa-MIR162a | MI0000667 | 361 | Chr2 | 23605799 | 23605969 | + | - |
| osa-MIR164a | MI0000668 | 1892 | Chr7 | 28523341 | 28523496 | - | - |
| osa-MIR164b | MI0000669 | 1921 | Chr5 | 15896163 | 15896271 | - | - |
| osa-MIR166a | MI0000670 | 19323 | Chr10 | 19987135 | 19987279 | + | High |
| osa-MIR166b | MI0000671 | 19371 | Chr6 | 30327084 | 30327289 | - | High |
| osa-MIR166c | MI0000672 | 19151 | Chr3 | 3487788 | 3487912 | + | High |
| osa-MIR166d | MI0000673 | 19377 | Chr2 | 26130059 | 26130183 | + | High |
| osa-MIR166e | MI0000674 | 36 | Chr3 | 765724 | 765860 | + | - |
| osa-MIR166f | MI0000675 | 19281 | Chr10 | 14483290 | 14483396 | - | - |
| osa-MIR167b | MI0000677 | 55818 | Chr3 | 30546928 | 30547090 | - | - |
| osa-MIR167c | MI0000678 | 55830 | Chr3 | 33130619 | 33130781 | + | - |
| osa-MIR169a | MI0000679 | 3953 | Chr1 | 8729104 | 8729276 | + | - |
| osa-MIR394 | MI0001027 | 78 | Chr2 | 27148154 | 27148263 | + | - |
| osa-MIR395b | MI0001028 | 31 | Chr4 | 31805334 | 31805419 | - | - |
| osa-MIR395d | MI0001029 | 22 | Chr4 | 31805055 | 31805142 | - | - |
| osa-MIR395e | MI0001030 | 20 | Chr4 | 31804912 | 31804999 | - | - |
| osa-MIR395g | MI0001031 | 19 | Chr4 | 31804633 | 31804718 | - | - |
| osa-MIR395h | MI0001032 | 20 | Chr8 | 3299144 | 3299255 | + | - |
| osa-MIR395i | MI0001033 | 19 | Chr8 | 3299319 | 3299417 | + | - |
| osa-MIR395j | MI0001034 | 20 | Chr8 | 3299479 | 3299590 | + | - |
| osa-MIR395k | MI0001035 | 19 | Chr8 | 3299652 | 3299750 | + | - |
| osa-MIR395l | MI0001036 | 17 | Chr8 | 3299997 | 3300090 | + | - |
| osa-MIR395s | MI0001037 | 22 | Chr4 | 32622943 | 32623028 | + | - |
| osa-MIR395t | MI0001038 | 0 | Chr9 | 6607353 | 6607495 | - | - |
| osa-MIR395c | MI0001041 | 10 | Chr4 | 31805193 | 31805281 | - | - |
| osa-MIR395a | MI0001042 | 0 | Chr4 | 31805494 | 31805635 | - | - |
| osa-MIR395f | MI0001043 | 0 | Chr4 | 31804774 | 31804855 | - | - |
| osa-MIR395u | MI0001044 | 0 | Chr9 | 6606701 | 6606786 | - | - |
| osa-MIR396a | MI0001046 | 97 | Chr2 | 34280384 | 34280537 | + | - |
| osa-MIR396b | MI0001047 | 100 | Chr6 | 3669649 | 3669764 | + | - |
| osa-MIR396c | MI0001048 | 280 | Chr2 | 34287873 | 34288013 | - | High |
| osa-MIR397a | MI0001049 | 361 | Chr6 | 28489785 | 28489898 | + | - |
| osa-MIR397b | MI0001050 | 315 | Chr2 | 3280781 | 3280898 | - | - |
| osa-MIR399a | MI0001053 | 0 | Chr1 | 30478636 | 30478784 | + | - |
| osa-MIR399b | MI0001054 | 1 | Chr2 | 7664026 | 7664122 | - | - |
| osa-MIR399c | MI0001055 | 0 | Chr5 | 26305938 | 26306047 | - | - |
| osa-MIR399d | MI0001056 | 10 | Chr6 | 1561789 | 1562074 | + | - |
| osa-MIR399e | MI0001057 | 0 | Chr1 | 30477612 | 30477729 | - | - |
| osa-MIR399f | MI0001058 | 0 | Chr6 | 20888631 | 20888747 | - | - |
| osa-MIR399g | MI0001059 | 0 | Chr2 | 7675284 | 7675402 | + | - |
| osa-MIR399h | MI0001060 | 1 | Chr5 | 26307936 | 26308034 | + | - |
| osa-MIR399i | MI0001061 | 0 | Chr2 | 7650684 | 7650799 | + | - |
| osa-MIR399j | MI0001062 | 5 | Chr4 | 28873121 | 28873226 | + | - |
| osa-MIR399k | MI0001063 | None | Chr5 | 26311253 | 26311358 | + | - |
| osa-MIR156k | MI0001090 | 871 | Chr9 | 18289107 | 18289212 | - | - |
| osa-MIR156l | MI0001091 | 10220 | Chr5 | 5230609 | 5230764 | + | High |
| osa-MIR159a | MI0001092 | 1717 | Chr1 | 17681923 | 17682194 | + | - |
| osa-MIR159b | MI0001093 | 1371 | Chr1 | 1215030 | 1215217 | + | - |
| osa-MIR159c | MI0001094 | 62 | Chr1 | 6556048 | 6556244 | - | - |
| osa-MIR159d | MI0001095 | 44 | Chr1 | 6563756 | 6563944 | - | - |
| osa-MIR159e | MI0001096 | 46 | Chr1 | 9760708 | 9760898 | - | - |
| osa-MIR159f | MI0001097 | 83 | Chr1 | 6693112 | 6693299 | + | - |
| osa-MIR319a | MI0001098 | 527 | Chr1 | 26823282 | 26823472 | - | - |
| osa-MIR319b | MI0001099 | 227 | Chr1 | 6677570 | 6677766 | - | - |
| osa-MIR160e | MI0001100 | 284 | Chr7 | 2216761 | 2216874 | - | - |
| osa-MIR160f | MI0001101 | 73 | Chr8 | 24396882 | 24396981 | + | - |
| osa-MIR162b | MI0001102 | 47 | Chr4 | 24405899 | 24406032 | + | - |
| osa-MIR164c | MI0001103 | 8 | Chr5 | 17327440 | 17327558 | + | - |
| osa-MIR164d | MI0001104 | 2213 | Chr2 | 33143567 | 33143660 | - | - |
| osa-MIR164e | MI0001105 | 1894 | Chr3 | 10542157 | 10542288 | + | - |
| osa-MIR166k | MI0001107 | 1477 | Chr2 | 32435003 | 32435129 | - | High |
| osa-MIR166l | MI0001108 | 1522 | Chr9 | 16951817 | 16951933 | + | High |
| osa-MIR167d | MI0001109 | 56522 | Chr7 | 4166295 | 4166404 | - | - |
| osa-MIR167e | MI0001110 | 56102 | Chr2 | 3742241 | 3742513 | - | High |
| osa-MIR167f | MI0001111 | 56422 | Chr10 | 14723044 | 14723156 | - | - |
| osa-MIR167g | MI0001112 | 56505 | Chr3 | 3347682 | 3347763 | + | High |
| osa-MIR167h | MI0001113 | 56418 | Chr12 | 25480618 | 25480737 | + | - |
| osa-MIR167i | MI0001114 | 56192 | Chr6 | 27674749 | 27674949 | + | High |
| osa-MIR168a | MI0001115 | 282915 | Chr2 | 1553154 | 1553240 | - | High |
| osa-MIR168b | MI0001116 | 1 | Chr2 | 27336428 | 27336533 | + | - |
| osa-MIR169b | MI0001117 | 3267 | Chr6 | 27295908 | 27296035 | - | - |
| osa-MIR169c | MI0001118 | 3454 | Chr4 | 30712338 | 30712449 | - | - |
| osa-MIR169d | MI0001119 | 1 | Chr9 | 14620382 | 14620484 | - | - |
| osa-MIR169e | MI0001120 | 804 | Chr2 | 31205866 | 31205997 | - | - |
| osa-MIR169f | MI0001121 | 845 | Chr2 | 18558299 | 18558512 | - | - |
| osa-MIR169g | MI0001122 | 1008 | Chr4 | 19420077 | 19420202 | + | - |
| osa-MIR169h | MI0001123 | 1003 | Chr8 | 26807349 | 26807470 | + | - |
| osa-MIR169i | MI0001124 | 1053 | Chr8 | 26803116 | 26803291 | + | High |
| osa-MIR169j | MI0001125 | 1011 | Chr9 | 19788861 | 19788985 | + | - |
| osa-MIR169k | MI0001126 | 1016 | Chr9 | 19792133 | 19792288 | + | - |
| osa-MIR169l | MI0001127 | 1003 | Chr8 | 26817488 | 26817595 | + | - |
| osa-MIR169m | MI0001128 | 1012 | Chr8 | 26813897 | 26814034 | + | - |
| osa-MIR169n | MI0001129 | 82 | Chr11 | 6085252 | 6085428 | - | - |
| osa-MIR169o | MI0001130 | 82 | Chr11 | 6081528 | 6081700 | - | - |
| osa-MIR169p | MI0001131 | 0 | Chr8 | 7641327 | 7641452 | - | - |
| osa-MIR169q | MI0001132 | None | Chr8 | 26817488 | 26817595 | - | - |
| osa-MIR172a | MI0001139 | 3477 | Chr9 | 22881834 | 22881942 | + | - |
| osa-MIR172b | MI0001140 | 201 | Chr1 | 42923736 | 42923973 | - | - |
| osa-MIR172c | MI0001141 | 199 | Chr7 | 13111485 | 13111595 | - | - |
| osa-MIR166g | MI0001142 | 19256 | Chr12 | 18329367 | 18329511 | + | - |
| osa-MIR166h | MI0001143 | 17849 | Chr2 | 32435174 | 32435292 | - | High |
| osa-MIR166i | MI0001144 | 443 | Chr3 | 25294953 | 25295097 | + | - |
| osa-MIR408 | MI0001149 | 581 | Chr1 | 12301661 | 12301873 | + | High |
| osa-MIR172d | MI0001154 | 3505 | Chr2 | 35143537 | 35143666 | - | High |
| osa-MIR167j | MI0001156 | 56523 | Chr1 | 32686068 | 32686227 | - | - |
| osa-MIR166m | MI0001157 | 17946 | Chr8 | 23045356 | 23045555 | + | - |
| osa-MIR166j | MI0001158 | 19511 | None | None | - | ||
| osa-MIR164f | MI0001159 | 1904 | Chr5 | 23343908 | 23344117 | + | - |
| osa-MIR413 | MI0001433 | None | Chr12 | 10136381 | 10136493 | + | - |
| osa-MIR414 | MI0001434 | 0 | Chr11 | 15504891 | 15504996 | + | - |
| osa-MIR415 | MI0001435 | 0 | Chr12 | 26270477 | 26270620 | - | - |
| osa-MIR416 | MI0001436 | 0 | Chr4 | 17456166 | 17456274 | + | - |
| osa-MIR417 | MI0001437 | 0 | Chr8 | 14939853 | 14939918 | + | - |
| osa-MIR418 | MI0001438 | None | Chr2 | 35182622 | 35182703 | - | - |
| osa-MIR419 | MI0001439 | 0 | Chr12 | 8237520 | 8237622 | - | - |
| osa-MIR426 | MI0001442 | 0 | Chr5 | 174006 | 174153 | + | - |
| osa-MIR390 | MI0001690 | 337 | Chr3 | 34275140 | 34275230 | - | High |
| osa-MIR396e | MI0001703 | 1338 | Chr4 | 34436820 | 34437003 | + | High |
| osa-MIR444a | MI0001719 | 1059 | None | None | High | ||
| osa-MIR530 | MI0003203 | 3 | Chr4 | 8303538 | 8303694 | - | - |
| osa-MIR535 | MI0003505 | 3861 | Chr11 | 16290530 | 16290623 | - | - |
| osa-MIR395m | MI0005084 | 17 | Chr4 | 32621993 | 32622112 | + | - |
| osa-MIR395n | MI0005085 | 33 | Chr4 | 32622243 | 32622308 | + | - |
| osa-MIR395o | MI0005086 | 1 | Chr4 | 32622381 | 32622449 | + | - |
| osa-MIR395p | MI0005087 | 21 | Chr4 | 32622525 | 32622592 | + | - |
| osa-MIR395q | MI0005088 | 21 | Chr4 | 32622668 | 32622735 | + | - |
| osa-MIR395v | MI0005090 | 1 | Chr9 | 6606575 | 6606643 | - | - |
| osa-MIR395w | MI0005091 | 0 | Chr9 | 6606291 | 6606359 | - | - |
| osa-MIR395r | MI0005092 | 17 | None | None | - | ||
| osa-MIR818a | MI0005247 | 104 | Chr1 | 40415422 | 40415565 | + | Low |
| osa-MIR818b | MI0005248 | 255 | Chr2 | 4007190 | 4007302 | + | - |
| osa-MIR818c | MI0005249 | 155 | Chr2 | 35928738 | 35928913 | + | Low |
| osa-MIR818d | MI0005250 | 443 | Chr4 | 34969161 | 34969299 | - | Low |
| osa-MIR818e | MI0005251 | 267 | Chr7 | 28154432 | 28154656 | - | - |
| osa-MIR820a | MI0005263 | 1532 | Chr1 | 14130479 | 14130669 | + | - |
| osa-MIR820b | MI0005264 | 1665 | Chr7 | 13120534 | 13120734 | - | Low |
| osa-MIR820c | MI0005265 | 1655 | Chr10 | 6928681 | 6928871 | + | - |
| osa-MIR444b | MI0006974 | 2333 | None | None | - | ||
| osa-MIR1428b | MI0008235 | 2 | Chr1 | 25390346 | 25390469 | + | - |
| osa-MIR1428c | MI0008237 | 2 | Chr2 | 2535020 | 2535161 | + | - |
| osa-MIR1428d | MI0008238 | 2 | Chr3 | 23077268 | 23077391 | + | - |
| osa-MIR1428e | MI0008239 | 5 | Chr3 | 23076870 | 23076979 | + | - |
| osa-MIR1428f | MI0010548 | 0 | Chr7 | 5451329 | 5451437 | - | - |
| osa-MIR1428g | MI0010549 | 0 | Chr10 | 3961370 | 3961478 | + | - |
| osa-MIR396f | MI0010563 | 1410 | Chr2 | 35636546 | 35636721 | - | High |
| osa-MIR396g | MI0013047 | 1122 | Chr6 | 5300630 | 5300810 | - | - |
| osa-MIR396h | MI0013048 | 1122 | Chr2 | 32841661 | 32841801 | + | - |
| osa-MIR396d | MI0013049 | 1542 | None | None | - | ||
| osa-MIR395x | MI0013350 | 1 | Chr4 | 32623067 | 32623162 | + | - |
| osa-MIR395y | MI0013351 | 25 | Chr8 | 3299815 | 3299924 | + | - |
| osa-MIR1440b | MI0021593 | 42 | Chr9 | 5980506 | 5980693 | + | - |
| osa-MIR818f | MI0023432 | 94 | Chr8 | 18746588 | 18746866 | - | - |
| osa-MIR1437b | MI0025198 | 41 | Chr8 | 3955862 | 3956129 | - | - |