Accession
MI0000658
Description
Oryza sativa
osa-MIR156f precursor miRNA
Gene family
MIPF0000008;
MIR156
Literature search
119 open access papers mention osa-MIR156f
(655 sentences)
(655 sentences)
Sequence
542537
reads,
374943
reads per million, 2 experiments
aguUGACAGAAGAGAGUGAGCACacagcggccagacugcaucgaucuaucaaucuucccuucgacaggauagcuagauagaaagaaagagaggccgucggcggccauggaagagagagagagagagagaugaaaugaugaugaugauacagcugccgcugcguGCUCACUUCUCUUUCUGUCAGCu
(((((((((((((((((((((((.(((((((.((.(((((((..(((.((..((((..((((...((.....)).................(((((....)))))...)))).))))..)).)))..))))..((.((....)).)).)))))))))))).)))))))).)))).)))))))))))
(((((((((((((((((((((((.(((((((.((.(((((((..(((.((..((((..((((...((.....)).................(((((....)))))...)))).))))..)).)))..))))..((.((....)).)).)))))))))))).)))))))).)))).)))))))))))
Structure
- - a c a ----------------- ga a aa cc gacaggauagcuagauagaaagaaagaga u
aguUGACAGAA GAGA GUGAGCAC cagcggc ag cug cauc ucu uc ucuu cuuc ggccg c
||||||||||| |||| |||||||| ||||||| || ||| |||| ||| || |||| |||| |||||
uCGACUGUCUU CUCU CACUCGug gucgccg uc gac guag aga ag agag gaag ccggc g
U U c - - auaguaguaguaguaaa ag g ag -a --------------------------gua g
Annotation confidence
High
Do you think this miRNA is real?
Genome context
Chr8: 21478230-21478415 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR156f
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR156f-5p
| Accession | MIMAT0000623 |
| Description | Oryza sativa osa-miR156f-5p mature miRNA |
| Sequence | 4 - UGACAGAAGAGAGUGAGCAC - 23 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR156f-3p
| Accession | MIMAT0022847 |
| Description | Oryza sativa osa-miR156f-3p mature miRNA |
| Sequence | 164 - GCUCACUUCUCUUUCUGUCAGC - 185 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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