Stem-loop osa-MIR160b

Accession

MI0000664

Description

Oryza sativa osa-MIR160b precursor miRNA

Gene family

MIPF0000032; MIR160

Literature search

57 open access papers mention osa-MIR160b
(190 sentences)

Sequence

554 reads, 392 reads per million, 2 experiments

aagguuugguuuugaucggcuugagagcgUGCCUGGCUCCCUGUAUGCCAcucauguagcccaauccaugguguguuuggaugcugugggugGCGUGCAAGGAGCCAAGCAUGcgugccaugaucucucuuucugccuu
(((((..((....(((((((......((((((.(((((((.((((((((((((((..(((...(((((.........)))))))))))))))))))))).))))))).))))))..)))..))))...))....)))))

Structure

     --uu  uuuu    --   uugaga      C       C              gu   cca     ugg 
aaggu    gg    gauc  ggc      gcgUGC UGGCUCC UGUAUGCCAcucau  agc   aucca   u
|||||    ||    ||||  |||      |||||| ||||||| ||||||||||||||  |||   |||||   g
uuccg    uc    cuag  ccg      cGUACG ACCGAGG ACGUGCGgugggug  ucg   uaggu   u
     ucuu  -ucu    ua   ----ug      A       A              --   ---     uug 

Annotation confidence High

Genome context

Chr6: 28081020-28081158 [+]

Mature osa-miR160b-5p

• Accession: MIMAT0000629
• Description: Oryza sativa osa-miR160b-5p mature miRNA
• Sequence: 30 - UGCCUGGCUCCCUGUAUGCCA - 50
• Evidence: not_experimental

Mature osa-miR160b-3p

• Accession: MIMAT0022852
• Description: Oryza sativa osa-miR160b-3p mature miRNA
• Sequence: 93 - GCGUGCAAGGAGCCAAGCAUG - 113
• Evidence: experimental ; Illumina [2]

References

1. PubMed ID: 12101121
   MicroRNAs in plants
   "Reinhart BJ, Weinstein EG, Rhoades MW, Bartel B, Bartel DP"
   "Genes Dev (2002) 16:1616-1626


2. PubMed ID: 21901091
   Viral infection induces expression of novel phased microRNAs from conserved cellular microRNA precursors
   Du P, Wu J, Zhang J, Zhao S, Zheng H, Gao G, Wei L, Li Y
   PLoS Pathog (2011) 7:e1002176