Accession
MI0001113
Description
Oryza sativa
osa-MIR167h precursor miRNA
Gene family
MIPF0000023;
MIR167_1
Literature search
82 open access papers mention osa-MIR167h
(255 sentences)
(255 sentences)
Sequence
81107
reads,
56418
reads per million, 2 experiments
cacaaguuggUGAAGCUGCCAGCAUGAUCUGaugaugaugaugauccaccucucucaucuguguucuugauuaauuacggaucaaucgaucAGGUCAUGCUGUAGUUUCAUCugcugguu
.((.(((.(((((((((((.(((((((((((((..((((..((((((.......(((..........)))........)))))))))))))))))))))))))))))))))).))).)).
.((.(((.(((((((((((.(((((((((((((..((((..((((((.......(((..........)))........)))))))))))))))))))))))))))))))))).))).)).
Structure
c a u C ga ga -accucuc ucug ac agu ggUGAAGCUGC AGCAUGAUCUGau ugau ugaucc uca u || ||| ||||||||||| ||||||||||||| |||| |||||| ||| ug ucg CUACUUUGAUG UCGUACUGGAcua gcua acuagg agu g u g u - -- -- cauuaauu ucuu
Annotation confidence
Not enough data
Do you think this miRNA is real?
Comments
This sequence is a predicted paralogue of the previously identified miR167 family [1]. It is predicted to target mRNAs coding for Auxin Response Factors (ARF transcription factors).
Genome context
Chr12: 25480618-25480737 [+]
Clustered miRNAs
1 other miRNA is < 10 kb from osa-MIR167h
| Name | Accession | Chromosome | Start | End | Strand | Confidence |
|---|
Database links
Mature osa-miR167h-5p
| Accession | MIMAT0001043 |
| Description | Oryza sativa osa-miR167h-5p mature miRNA |
| Sequence | 11 - UGAAGCUGCCAGCAUGAUCUG - 31 |
| Evidence | not_experimental |
| Database links |
|
Mature osa-miR167h-3p
| Accession | MIMAT0022874 |
| Description | Oryza sativa osa-miR167h-3p mature miRNA |
| Sequence | 92 - AGGUCAUGCUGUAGUUUCAUC - 112 |
| Evidence |
experimental
Illumina [2] |
| Database links |
|
References
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